BAC Information

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BAC

Clone NameMSMg01-441B08
Chromosome17 (Build37)
Map Location 31,967,482 - 31,967,671
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
Downstream geneSnf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441B08.T7 (MSMg01no441_b08.b1)MSMg01-441B08.TJ (MSMg01no441_b08.g1)
ACCAG531048AG531049
length753745
length of high quality
(start - end)
193 (51 - 243)507 (79 - 585)
definitionCHROMAT_FILE: MSMg01no441_b08.b1 PHD_FILE: MSMg01no441_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:44 2005CHROMAT_FILE: MSMg01no441_b08.g1 PHD_FILE: MSMg01no441_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCATGTCGTTGGCTTCATTGCTCTGGGTTTGGAAGCCA
GCATCTCAGTAGGCCTGACAGCTCAGGGGCTAGCCTGAGCTTGTAGCTGA
GAAGTTAGGCAGAGCTGCATGTGATTGGTTTGGGAATACACTTCTACGAG
GTGTCGCTTGCCTTGCGGCTGTTGTCTGGAGGCTTCAGCATATCGGNNNC
GGTTGGACTAGNTGGNGTGGGCTCAGCCCTTTGCCACATGGTGCAAGGNC
ATCTCTACAGGCTTAATCGGGTCTTCTTCTAAAAATAAAAAACTTTCTCC
CTTGGGAGGGGGTCCCCCCAAGGGGAAGGGGGGGGGAAAAAACCCCCCTC
CGGGGGGCGACCCTCCCGGTGGGGGGGGNTCTTGTCCCCCCCCCCCCCCC
CACAAAAAAACCCNCCCCTCCCNNNNTNNNNGGGGNNNNNNNNNNNNNNN
GGGNTTGTGNNTTGAAGAGTNNNNCCNNNNNNNNCNNNNNAGANNNNNNN
NNTGTTGGNNNNTGTGGTGTGTGTTGTTGNAGGNNNNAGGGGAAGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTGNNNTATGGGNTGTGGGGGGGNNTC
TTCNNNNNNNNNNNNNNNTTTNNNNNNNNCNGATGGGTGGTGGGNCCTCC
NNNNNNNNNACTGGTGAGGGATCGGTGGGGGGGGNNNNTGTGTGGGGTGC
GGG
NNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGCTAAAGAAAAAACATGT
CTCTGTGGGATTCACTAACTTTTCTTATGGTAAACTGTATCTGGCTAAGA
CTGTCCTTTCTATCCTAGTAAACAACTAACAGAAAAGCCTGGAGCTGTAG
GCTCTGACTTTATAATGCTAATTAGTACTGAATAGGTAACTTCCTAGTTG
AATTTTAAGTAGGGCGTTGGAACCCTGGCTAAGTTTGGCTGAACAAATTT
GAAATACACTTTATTAAGAATAACACTGAGTTGATATTCCTCCGCATTTT
TGGATGACAGGCGGGAAACAGGGAGGAGGGGGTGACGACTGGCTCCGTAG
TACAAGGCCAATTGGCTTTTTATTTTGGGGTGGGAGGCAGTGAAGACAGT
ACGGTCTCCAACCTCTCTCCCACCTATTAATTAAGTTAAATAAGGCAACG
CTTAACTGAAGTGATCAAATAATTTTCTCATCCGTAGATGAGTGGGCTTT
TAACCTTGGCTTGGGTGGACATTGACCCGATTCCTCCTGTGGGTGCTGTC
ACGACCCACACCTGTGGCTCTTGGCATCTTTTGGGGAGGGGAGGCAGAGC
CCCACATATTTTTTGTTTTTTACCCAAAATTAAATACCTACCCTCCTTTT
TAACCCGGGCCACACCCACCCGAAACTCCTAAAGGGTCTCACTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_b08.b1 MSMg01no441_b08.b1 CHROMAT_FILE:
MSMg01no441_b08.b1 PHD_FILE: MSMg01no441_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:44 2005
         (193 letters)



>mm_chr17_31967279_31967872
          Length = 594

 Score =  337 bits (174), Expect = 4e-97
 Identities = 186/190 (97%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttccatgtc-gttggcttcattgctctgggtttggaagccagcatctcagtag 62
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttccaagccagttggcttcattgctctgggtttggaagccagcatctcagtag 263

                                                                       
Query: 63  gcctgacagctcaggggctagcctgagcttgtagctgagaagttaggcagagctgcatgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctgacagctcaggggctagcctgagcttgtagctgagaagttaggcagagctgcatgt 323

                                                                       
Query: 123 gattggtttgggaatacacttctacgaggtgtcgcttgccttgcggctgttgtctggagg 182
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 gattggtttgggaatacacttctatgaggtgtcgcttgccttgcggctgttgtctggagg 383

                     
Query: 183 cttcagcata 192
           ||||||||||
Sbjct: 384 cttcagcata 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 594
Length adjustment: 8
Effective length of query: 185
Effective length of database: 586
Effective search space:   108410
Effective search space used:   108410
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)