BAC Information

Click to search

BAC

Clone NameMSMg01-442I01
Chromosome17 (Build37)
Map Location 10,945,991 - 11,014,508
singlet/doubletdoublet
Overlap genePacrg
Upstream geneQk, LOC675815
Downstream genePark2, LOC100041113
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442I01.T7 (MSMg01no442_i01.b1)MSMg01-442I01.TJ (MSMg01no442_i01.g1)
ACCAG532134AG532135
length755779
length of high quality
(start - end)
251 (78 - 328)320 (82 - 401)
definitionCHROMAT_FILE: MSMg01no442_i01.b1 PHD_FILE: MSMg01no442_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:41 2005CHROMAT_FILE: MSMg01no442_i01.g1 PHD_FILE: MSMg01no442_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,945,991 - 10,946,241)(11,014,189 - 11,014,508)
sequence
TTCTCTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGC
GACCGCGGAATTCATAAGTATACCAAGAGACAGATTGTACAAAAATGGTA
GAAACCAAAGAGCCAAGGGTCCATAGTCTGAATAAACACAGAGAGGAAGA
AGGACAAAGACGGGGGAAGCATCGGGCCCCTCTTTGGCTTATGAACCTGG
AGATAAACACACAAGGATGTTAAAGGAACACCAAGGAAGAGAGGCGCCTG
GCCCTCTTCAGTGGTAGACCTTAAAACTACCTTATCGCATGCTAGGTACC
TGAACAAAGGTAGATCCAACATGTAAAATTTTTTTTCCAAGAGTAACAGG
CTAGGACAGCAAGCACAAAAAGATTTATAAACTCAGGGAAAGAAGAAAAA
CTCATTTTTTGGACCATTTTCAATATCATACAATGGGTGTGTAGAACATC
AATCATAGGAGAAATATACCAACCATGGTAAAGTTAAACATCATTTCAAA
ACACGTGAAAATACATCCGAATCTAAGATTTAGTAGAGGCAAGTGTTTAC
TAGAGAGTCTTACCCAAGACTTAGAAGAGGCACCCTGTCATTCTTAATAC
TTTTCTCATATTCCAACGATCGGATTTATTTTAAGAATTTCCTGTACGTC
GTCTAAATACCTTTTATTAAAATTTGTCCCCCCAAAAAACCTGTAAGGTG
CATTCGTCTTCCTGGTGTTTTTTTTTAACTTTATTTGTCTTCTTTCTTTT
TTTAA
ATTGTCACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATAATGTGAAAACATGT
ACATGACTCAAATACAGTATTATCTTGATTGCCAAGTGAGCTTATGCATG
CAGATTGTAGAAACAGAGTCTTCATAGTTTTCCAACTACAGTATATTTAT
GTTAGCATTCATTTTCTCCATTGTGTGCTACCCAGCATATAGTTATGTTA
AGTTTCCCATTACAAATTCTGGTAGTTAATGTTTTAACTTTTTGCTTCAT
TTGAGACTTATTTTGCTCTTTGCACATTTTACTTAAATTTATGTCAGCCT
TCATTTATTTTCTTTCAAAGATATCTTACTATTCCTTTACATTTATAAGA
AATCATATATTTTTTTCAGCCCAGGGCCAAGAGCTAGCTTTCATGCTGAC
CTAGATCCATAAACGTGTTTCATCCGTGAATCTTGAATATTTGATTGATA
TATCCTTGACCTATATTACTGAATCCCCCTATATTTTTCCTCCTTTTCGA
ACTATACTTTCCCCACTATTTTACTCCCTGTATCTTCCTGTTTACTTTAT
TCCCCTACTTTATTCCCGTACCGCTGCACTCTCCCACGGTACCTCTCCAT
ACATTTCATTGCTCCCCACTGTCTTCCTCTTTACTTTCATTGCTTCTCCT
TTCCTCTTCTTCTTTTCGGCTTCCTCCTCTTTCTTTCGTACCTTCCTCTT
CTCATTTTTCCCCCCTTCTTCCCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_i01.b1 MSMg01no442_i01.b1 CHROMAT_FILE:
MSMg01no442_i01.b1 PHD_FILE: MSMg01no442_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:41 2005
         (251 letters)



>mm_chr17_10945791_10946441
          Length = 651

 Score =  439 bits (227), Expect = e-128
 Identities = 245/251 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacagattgtacaaaaatggtagaaaccaaagagccaagggtccatagtctgaataaac 60
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 201 agacagattgtacaaaaatggtagaaaccaaagagccaagggcccatagcctgaataaac 260

                                                                       
Query: 61  acagagaggaagaaggacaaagacgggggaagcatcgggcccctctttggcttatgaacc 120
           ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 261 acagagaggaagaaggacaaagatgggggaagcatggggcccctctttggcttatgaacc 320

                                                                       
Query: 121 tggagataaacacacaaggatgttaaaggaacaccaaggaagagaggcgcctggccctct 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tggagataaacacacaaggatgttgaaggaacaccaaggaagagaggcgcctggccctct 380

                                                                       
Query: 181 tcagtggtagaccttaaaactaccttatcgcatgctaggtacctgaacaaaggtagatcc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgggagaccttaaaactaccttatcgcatgctaggtacctgaacaaaggtagatcc 440

                      
Query: 241 aacatgtaaaa 251
           |||||||||||
Sbjct: 441 aacatgtaaaa 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no442_i01.g1 MSMg01no442_i01.g1 CHROMAT_FILE:
MSMg01no442_i01.g1 PHD_FILE: MSMg01no442_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:41 2005
         (320 letters)



>mm_chr17_11013989_11014708
          Length = 720

 Score =  588 bits (304), Expect = e-172
 Identities = 316/320 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctataatgtgaaaacatgtacatgactcaaatacagtattatcttgattgccaagtgagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctataatgtgaaaacatgtacatgactcaaatacagtattatcttgattgccaagtgagc 461

                                                                       
Query: 61  ttatgcatgcagattgtagaaacagagtcttcatagttttccaactacagtatatttatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 460 ttatgcatgcagattgtagaaacagagtcttcatagttttccaactacagtatattcatg 401

                                                                       
Query: 121 ttagcattcattttctccattgtgtgctacccagcatatagttatgttaagtttcccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttagcattcattttctccattgtgtgctacccagcatatagttatgttaagtttcccatt 341

                                                                       
Query: 181 acaaattctggtagttaatgttttaactttttgcttcatttgagacttattttgctcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acaaattctggtagttaatgttttaactttttgcttcatttgagacttattttgctcttt 281

                                                                       
Query: 241 gcacattttacttaaatttatgtcagccttcatttattttctttcaaagatatcttacta 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcacataaaacttaaatttatgtcagccttcatttattttctttcaaagatatcttacta 221

                               
Query: 301 ttcctttacatttataagaa 320
           ||||||||||||||||||||
Sbjct: 220 ttcctttacatttataagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)