Query= MSMg01no442_j01.b1 MSMg01no442_j01.b1 CHROMAT_FILE:
MSMg01no442_j01.b1 PHD_FILE: MSMg01no442_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:47 2005
(281 letters)
>mm_chr17_64784534_64785214
Length = 681
Score = 513 bits (265), Expect = e-150
Identities = 277/281 (98%)
Strand = Plus / Plus
Query: 1 taaatactttaaaagattgcttctttttttaaactcatttcttcattcaacaataacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaatactttaaaagattgcttctttttttaaactcatttcttcattcaacaataacaac 260
Query: 61 aaaggattttttgacaagctgcagactgatatacacagctaagcagtacacattttccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggattttttgacaagctgcagactgatatacacagctaagcagtacacattttccta 320
Query: 121 gtgatatctactgccacacccactccaatagtgatctgcgtggcaggcccaaaaacctgg 180
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 321 gtgatatctactgccacacccactccagtagtgatctgtgtggcaggcccaaaaacctgg 380
Query: 181 acgcagtccggaggtgaaaagttcacagaaacttagtctcctggaaccatggcattccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgcagtccggaggtgaaaagttcacagaaacttagtctcctggaaccatggcattccca 440
Query: 241 tatcaagaatgccccagatttgtccctttgataatatggtg 281
|| |||||||||||||||||||||||||||||||| |||||
Sbjct: 441 tagcaagaatgccccagatttgtccctttgataatgtggtg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no442_j01.g1 MSMg01no442_j01.g1 CHROMAT_FILE:
MSMg01no442_j01.g1 PHD_FILE: MSMg01no442_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:47 2005
(283 letters)
>mm_chr17_64934022_64934707
Length = 686
Score = 468 bits (242), Expect = e-136
Identities = 271/288 (94%), Gaps = 15/288 (5%)
Strand = Plus / Minus
Query: 5 ctcccccc-cccctactttctgtcttctcactgaccgaaaaggtgttttataaaaaatgt 63
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 486 ctccccccacccctactttctgtcttctcactgactgaaaaggtgttttataaaaaatgt 427
Query: 64 tttctacaattcaaccagacttgatgattaggcaacagttggtactgcggctaggtggat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 426 tttctacaattcaaccagacttgatgattaggcaacagttggtactgcggctaggcggat 367
Query: 124 tacttgagattcagtacagttctccaatttctaacatttaaaaagg--aaaaaaaaagct 181
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 366 tacttgagattcagtacagttctccaatttctaacatttaaaaaggaaaaaaaaaaagct 307
Query: 182 agagttcctttatagatcttatctgtgtacatttctgttcagtacatttcaatgtcttgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agagttcctttatagatcttatctgtgtacatttctgttcagtacatttcaatgtcttgt 247
Query: 242 atc------ttttttttatatagcagctaacgatctgccattggtcag 283
||| |||||||||||||||||||||||||||||||||
Sbjct: 246 atcaaaaaa------ttatatagcagctaacgatctgccattggtcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 686
Length adjustment: 9
Effective length of query: 274
Effective length of database: 677
Effective search space: 185498
Effective search space used: 185498
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
