BAC Information

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BAC

Clone NameMSMg01-443F01
Chromosome17 (Build37)
Map Location 62,667,763 - 62,668,002
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043560
Downstream geneEfna5, Fbxl17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F01.T7 (MSMg01no443_f01.b1)MSMg01-443F01.TJ (MSMg01no443_f01.g1)
ACCAG532750AG532751
length727860
length of high quality
(start - end)
243 (75 - 317)68 (75 - 142)
definitionCHROMAT_FILE: MSMg01no443_f01.b1 PHD_FILE: MSMg01no443_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:53 2005CHROMAT_FILE: MSMg01no443_f01.g1 PHD_FILE: MSMg01no443_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAGCGC
GGAATTCTCTGGATTTCCGACCATTTCTATATATTTTGAGGAGATGAATG
ACTTTTAGATCAAAATAGTAGTACCAGACCGTGAATGGCCCTATTCAAAC
TTCAGCACCAAAAACTACCAAGCATCCAACACTCTAGATTCAGCTTTGAG
GTCAAGACCTTCTCAGGACTTCATGCTCTTAATTCTCCTGCTGGCTTATG
CCACAGCAGCTGGCTGCCAGGGAACCAAAGATACCAAGGTGCTTGGTGTT
CTGCCGTGCAATAGTTTATCTTTTATTTAAAAGAGCTTTCCTTAAGCTCC
TCGTTGTCTTTAAATGAGAATTCAAGAAATACAGCAAACTCTTTGAATGG
AAGCTAAACACAATTGTTGTGGATTTGTAGTGTCTCCTCCGGCATAGACT
TAGCACGTGTTATCCTAAGACAGATTTCTCTAATTTGGAACATATTTTAT
TAATTCTCCAAAATGCCTTTTCATCCTTTGCACATTTCTAGTATACAGAT
TAACAGGATTCCAGGGAACTTATTATTAATTTCTCCCCTAACTTATCATC
TTCATCACCGCCCAGAGTGGCTCGTCAATAATGACTTCCTATAAAACGCG
TTTTTTTTTTTATTTGATAAGCATAACAACACACTGATCCATATAAAATG
CAAATTGTTCTAACCACAAATTGTGCG
TTCTTCGATGCACGGGTGGCCTGGCGGCGCCTGGATCAGACACGAGGTGA
ACTATAGAAGTTACGCGCAACTCATATTTAGATTTGTAATCTAATTTTAA
TTGGGTTATTTGTTATATACCTGTATATATATATATATGCATACATACAT
GTATATCTCCCCTCCCCCTCCGCGCGCTGCCCCTTCCCTCTTTCCCCCTC
ATCCCCTTCCCCTGCCCCCCCCTCTCGCCCGCCTCCTCCCCTTTTGCTAG
CCCCCCCCGCGTGCGCCCTTTTCCCTTTTACTTTCCGCGCGTCTTGGCCC
CACCTACACATCCCCCTTTTTTTTTTTTTTTCCGCTGCCCCTCCCCCCCT
TCCCCCCCTTCCCTATCCCCCCCCCCCTCCCCCCTCTCCTTCGCCTCCCC
CCCCTTTTTCTTCCTTTCCCCTTTCCCCCTCCCCCCCCCCCTCCCCCCCT
TCTTCCCTTTTTCCTCCGTCCCCCCCTTCCCTTCCTTTTCCCTTTCCCCC
CCTGTTTCTTTCCCCCCCCCCCCCTCTCTTATTTTCCCTCCTCCCCTTCC
TTTCCTTTTTTTCCCCCCTTCCCTCTTCTCCCCCTTCCCCTTTCTTTCCC
CCGCCCTCCCGCCTCTTTTCTTGTTTCTCCTTCCCCCCCTGTACGCCCCT
CTCCCCCTTTCCCTTCCCCCTCCCCCCCCCCTTTATCTTACACCGTCCCC
TTCCCCTCCTTTCTCCCCCTTGCTCCCCCCTCCGCTCCCCTCCCCTCTAT
CCCCCCTCGTCTCCCCCTCTCCTCCCCCCCTTTTCCCCCCCCCCCTCCTC
CCCTTCTCCGCGTTTTCTTGCTTCCCCCTTACCCGTCCACTCGCCTTTGC
CTCCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f01.b1 MSMg01no443_f01.b1 CHROMAT_FILE:
MSMg01no443_f01.b1 PHD_FILE: MSMg01no443_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:53 2005
         (243 letters)



>mm_chr17_62667563_62668202
          Length = 640

 Score =  416 bits (215), Expect = e-121
 Identities = 235/243 (96%), Gaps = 3/243 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctatatattttgaggagatgaatgacttttagatcaaaatagtagtaccagaccgtga 60
           ||||||||||||||||   ||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 ttctatatattttgag---atgaatgacttttagatcaaaatagtagtagtagaccgtga 257

                                                                       
Query: 61  atggccctattcaaacttcagcaccaaaaactaccaagcatccaacactctagattcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atggccctattcaaacttcagcaccaaaaactaccaagcatccaacactctagattcagc 317

                                                                       
Query: 121 tttgaggtcaagaccttctcaggacttcatgctcttaattctcctgctggcttatgccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttgaggtcaagaccttctcaggacttcatgctcttaattctcctgctggcttatgccac 377

                                                                       
Query: 181 agcagctggctgccagggaaccaaagataccaaggtgcttggtgttctgccgtgcaatag 240
           |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 378 agcagctggctgccagggaaccaaagataccaaggtgcttggtgctctcccgtgtaatag 437

              
Query: 241 ttt 243
           |||
Sbjct: 438 ttt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 640
Length adjustment: 9
Effective length of query: 234
Effective length of database: 631
Effective search space:   147654
Effective search space used:   147654
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)