BAC Information

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BAC

Clone NameMSMg01-445I10
Chromosome17 (Build37)
Map Location 49,159,860 - 49,325,160
singlet/doubletdoublet
Overlap geneLrfn2, 1700008K24Rik, LOC672972
Upstream gene1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl
Downstream geneMocs1, Daam2, Kif6, EG668470, Rftn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445I10.T7 (MSMg01no445_i10.b1)MSMg01-445I10.TJ (MSMg01no445_i10.g1)
ACCAG534436AG534437
length736758
length of high quality
(start - end)
237 (64 - 300)461 (71 - 531)
definitionCHROMAT_FILE: MSMg01no445_i10.b1 PHD_FILE: MSMg01no445_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:45 2005CHROMAT_FILE: MSMg01no445_i10.g1 PHD_FILE: MSMg01no445_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,159,860 - 49,160,091)(49,324,700 - 49,325,160)
sequence
TTGCGGCCGCTAAACGACTCAAATTCGTAGCGGATCCGCGGAANTCTCAT
TTCGACATACATATACATATCAAGGTCCTCAACCGTGGGCCCCGCCTGTC
TGCCAACAGCCCTTGTATATGTGGATTTGGGTCTCGTAGTCTTTTTCAGC
CATGGATGAAGCCATGACTCTGCTGTCAAGCAGACTGGACACAGTGGCAC
AGGGACATATTCACTCCTTTCTGTGTGACAAGTTCACTCTTCTCCCCCAT
GACTCATGCACATGGTCAATGACACTTGTTCTACCAGGACTCTCATGGTT
TTTCNTATAGGNAACCAGGTCTGTCATGTGAGCACAGGTTTATATGCTCA
CTATTGTAGATTCATGGAGTCATTGTCCCCTCCTTACCTCAGCTCCCAGT
CTCCACGTGTCCTTCTCCAGTACTTCTGGTTGCCTCAGCACCCCATGAGA
AAGTCTTCCATTCTTCAAGGTCAGTTTCATCTTAAGGTTATTTCCCAACA
GTAAAGATGACATATGACTGTGGTGGCCTGCTGCTGGGTAGGTGCCATTT
CTGTCGACTTTTAACATTCTCCTGTGCGCAGCCTGTTGCCGCAATATCCC
CGCACTACCCGCCACAACGCTTTTTTTTTTTTTTTTCTACCACACGTGAA
ATTTGCCTTGTCCATTAAATACCCTCTTTTACTCATTTTTACTTATTCTC
ATTTTTTTTTTCTTTTTTCTTCACTCGTTTCTTTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATACCTGGGGCCTACATGATGAAAGGAGA
AAACAGACTCCTTCAAATTGTCCCCTGACCTCCACATATTCACGATAGTA
TTCAAAGACACACACACACACTTTCCTTTGCTCCTAAACAGCTAAGCACA
TAGCTAGTAAACTGAGACCTGGGCTCTGGACTACTCCAGGAAGGACATCT
TGCCCAGCCTTCTAAGTCAGTGTCCTGTATGCTGGCTTGCTGGTCTGTTA
TTTAAAATACCACCGAACATGGTCCTCATGTTCAGCCAGGGTTGGGCCCT
GGCCCATGGGTGCTTTAAGGATCAGATCAACACTTGTGATCCTTCCTCTG
CAAGCAGACTCAGTCCTGAAGCCCCAGTGTCTGGCTGGGCCTTGCCTCTG
CAGGGAAAGTGGCTGGTGTGGAATTTAATCACCTCCTTAGAAGTAGAGCC
CAGCTCCCCAGGGGCCGCTTGGTCACCCAGTGTGAAACCAGCAGGTTTAT
TTATCGGCTCTGACTTTAATTATTCCCCCCTCATTGGAGATCTTTCTTCA
GTATACAAAAAATGTCCTGGTCTGTTTATGTGGACTGAAGTTTTCCTGGC
TCTAGGAACCTAATTATCCTGGTTTTGCACCGGAACCTAAATTCGTCCCC
CGTCTCGTATATACTGATACACCGTCTTCCACTTCCACGTGCCATACCCT
CTGGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_i10.b1 MSMg01no445_i10.b1 CHROMAT_FILE:
MSMg01no445_i10.b1 PHD_FILE: MSMg01no445_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:45 2005
         (237 letters)



>mm_chr17_49159660_49160296
          Length = 637

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatatcaaggtcctcaaccgtgggccccgcctgtctgccaacagcccttgtatatgtg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tacatatcaaggtcctcaaccgtgggccccgcctatctgccaacagcccttgtatatgtg 260

                                                                       
Query: 61  gatttgggtctcgtagtctttttcagccatggatgaagccatgactctgctgtcaagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgggtctcgtagtctttttcagccatggatgaagccatgactctgctgtcaagcag 320

                                                                       
Query: 121 actggacacagtggcacagggacatattcactcctttctgtgtgacaagttcactcttct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 321 actggacacagtggcacagggacatattcactcctttctgtgtgacaagcccactcttct 380

                                                               
Query: 181 cccccatgactcatgcacatggtcaatgacacttgttctaccaggactctca 232
           |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 cccccatgactcatgcacatggtcaatgacacttgttctaccgggactctca 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no445_i10.g1 MSMg01no445_i10.g1 CHROMAT_FILE:
MSMg01no445_i10.g1 PHD_FILE: MSMg01no445_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:45 2005
         (461 letters)



>mm_chr17_49324399_49325259
          Length = 861

 Score =  861 bits (445), Expect = 0.0
 Identities = 457/461 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatacctggggcctacatgatgaaaggagaaaacagactccttcaaattgtcccctgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aatacctggggcctacatgatgaaaggagaaaacagactccttcaaattgtcccctgacc 703

                                                                       
Query: 61  tccacatattcacgatagtattcaaagacacacacacacactttcctttgctcctaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tccacatattcacgatagtattcaaagacacacacacacactttcctttgctcctaaaca 643

                                                                       
Query: 121 gctaagcacatagctagtaaactgagacctgggctctggactactccaggaaggacatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 642 gctaagcacatagctagtaaactgagacctgggctctggactactccaggaagggcatct 583

                                                                       
Query: 181 tgcccagccttctaagtcagtgtcctgtatgctggcttgctggtctgttatttaaaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgcccagccttctaagtcagtgtcctgtatgctggcttgctggtctgttatttaaaatac 523

                                                                       
Query: 241 caccgaacatggtcctcatgttcagccagggttgggccctggcccatgggtgctttaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caccgaacatggtcctcatgttcagccagggttgggccctggcccatgggtgctttaagg 463

                                                                       
Query: 301 atcagatcaacacttgtgatccttcctctgcaagcagactcagtcctgaagccccagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atcagatcaacacttgtgatccttcctctgcaagcagactcagtcctgaagccccagtgt 403

                                                                       
Query: 361 ctggctgggccttgcctctgcagggaaagtggctggtgtggaatttaatcacctccttag 420
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 402 ctggctgggccttgcctctgcaggggacgtggctggtgtggaatttaatcacctccttag 343

                                                    
Query: 421 aagtagagcccagctccccaggggccgcttggtcacccagt 461
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 342 aagtagagcccagctccccaggggccgcttgttcacccagt 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)