Query= MSMg01no445_o05.b1 MSMg01no445_o05.b1 CHROMAT_FILE:
MSMg01no445_o05.b1 PHD_FILE: MSMg01no445_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:15 2005
(264 letters)
>mm_chr17_47970614_47971275
Length = 662
Score = 431 bits (223), Expect = e-125
Identities = 251/261 (96%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattttttacggactgcccatcaccaggctgtcactccaactttctcacacgag 63
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattttagacagactgcccatcaccaggctgtcactccaactttctcacacgag 263
Query: 64 ggtgagtgtagaaggaattgaggagaggccagtctgttgatccggctggtatggtaagct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgagtgtagaaggaattgaggagaggccagtctgttgatccggctggtatggtaagct 323
Query: 124 ctggctgtgcggaggaactgtcaccaaaaagtggggggggggggctcggagaccctcaga 183
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 ctggctgtgcggaggaactgtcaccaaaaagtgggggggggg--ctcggagaccctcaga 381
Query: 184 gtgaccccaggagcttgttttcagccaggtggggcttggcaggtccgtggaggtgattct 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgaccccaggagcttgtaggcagccaggtggggcttggcaggtccgtggaggtgattct 441
Query: 244 caggagagaagcccctctggg 264
|||| |||||| |||||||||
Sbjct: 442 caggtgagaagtccctctggg 462
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 662
Length adjustment: 9
Effective length of query: 255
Effective length of database: 653
Effective search space: 166515
Effective search space used: 166515
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_o05.g1 MSMg01no445_o05.g1 CHROMAT_FILE:
MSMg01no445_o05.g1 PHD_FILE: MSMg01no445_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:15 2005
(422 letters)
>mm_chr17_48143331_48144152
Length = 822
Score = 781 bits (404), Expect = 0.0
Identities = 421/434 (97%), Gaps = 12/434 (2%)
Strand = Plus / Minus
Query: 1 caggctccactgaaggacactatgtcttaactttaaa------------acacacacaca 48
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 719 caggctccactgaaggacactatgtcttaactttaaaacacacacacacacacacacaca 660
Query: 49 cacacacacacacacacacacacacacacacacacactgcctactttcccctcctccatg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cacacacacacacacacacacacacacacacacacactgcctactttcccctcctccatg 600
Query: 109 ggaaaacaaaagccaccaaaagcacatgtctaggaaggatgcttttaatcccaaagcagg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ggaaaacaaaagccaccaaaagcacatgtctaggaaggatgcttttaatcccaaagcagg 540
Query: 169 gcagagttgtccgttttaattacacacccacaaactctccaaattagtgaactttgtctc 228
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 539 gcagagttgtccgttttaattacacacccacaaactctccaaattagtgagctttgtctc 480
Query: 229 cgttggtgttttgtccctcccacgatgggtgatggatgatgattgattgaccaattgtct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cgttggtgttttgtccctcccacgatgggtgatggatgatgattgattgaccaattgtct 420
Query: 289 aatgggcttcattggtctctcttgcaactcagaatctgccctaagactatccatcctgca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatgggcttcattggtctctcttgcaactcagaatctgccctaagactatccatcctgca 360
Query: 349 cagagaatagaggaggggcctttgcctgcagtgacagaggagagataatgtgggagtagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 cagagaatagaggaggggcctttgcctgcagtgacagaggagagataatgtgggagtagg 300
Query: 409 gatagatacagggg 422
||||||||||||||
Sbjct: 299 gatagatacagggg 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
