BAC Information

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BAC

Clone NameMSMg01-446G02
Chromosome17 (Build37)
Map Location 36,126,809 - 36,127,053
singlet/doubletsinglet
Overlap genenone
Upstream geneVars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1
Downstream geneH2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446G02.T7 (MSMg01no446_g02.b1)MSMg01-446G02.TJ (MSMg01no446_g02.g1)
ACCAG535090AG535091
length779807
length of high quality
(start - end)
236 (67 - 302)245 (69 - 313)
definitionCHROMAT_FILE: MSMg01no446_g02.b1 PHD_FILE: MSMg01no446_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:53 2005CHROMAT_FILE: MSMg01no446_g02.g1 PHD_FILE: MSMg01no446_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCCA
GCTTTACCTCTACAGCATGCCTCCCTACCTGCCAGCCTGCTTCCCTCCAT
GAGGGCAATGGACTAACCCCCTGAAACTGTAATTAGGTCCCAGTTAAATG
ATATCTGTTGTTGTTGATTATGTTGTTGTTGCCATGATCCTGATGTCTCT
TCACAGCAAGAGAACAATAACTATGACACAACTTGACTTATATTTTATTA
TTGTAAAGAACTCTCAGTGAAAACTAAGAAACTTGTATCTTCTTTTGTTG
CATCAAATTTGATGCTTTTTTTTNCTCNAACTAACACCTTGCATAAGTAT
TATTACTACCTATCCATCTGACTCACAGGATGCTGGAGTAACATTGTACC
TAGAGTCGCTATTCAGAGATTTGCAGCTCTGCGCTTGATTCCTTCCTCTC
AGGTGGTCATGACCTGCTCTCTCCCTTTTCCTGACTATTTATATTGTTAG
TGTGCTTCTGTCCTTGTATCGCATCATGTATTTCCTGCTCTTCTTTCTGG
ATAATTCCCTTCCTTTCTTTTTCCCCCCTTCACTTTCCCATCTCCTTCCC
TCTCTCTCTTTTTTCTCCATTTTCCTTTTCTTTTATCTTCTCCCCTTTTC
CCTCCCACACTTCTTTTTTTCTTCTATCTTTCACAACCCGCATCCCTCTC
CCCTTCCCCCGCTTTTTTTCTTTCTTTCCTTTCTTCACTTTCCTCCCTAC
CTTCTTTTCTCTCTTCTTCTCTCTATATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAAATGTTCACTCCCTTCAATGGCTCCAAG
AAGGACATGATTAGTCCTGTAACCTGCACTGCCATACGGAGTTAGAACCA
CACCATGTGACCGTGCATGAAGGTTATGTACCCAGAATGTTAGAAAGGAG
GAAAAGGCGCAACTAAGAAAAATCCAGTCTCTAATCTAGGGCTCTTTGGC
CTCACAAACAACACACAGTTGGCCGTTGTGTCTGCCCCTTGATGCTTGTG
TTCCCTGTCCTCTGTTGTTTCAAGGTTCCCCATGGGTGTTTGGGTGAGTT
GTCTTTTTTTTCCTCTATTTGTTCCATCCACATCCCCCCCCTTGCTCCCT
TCTTTTTTCTCTCCCTTATCTTCTTTTTTTCTTTCTTTATTCTCTTCCTT
TCTTTTTCCTCCTTTTCCCTCTTCCTCCTCTCTCTCCCCTTTTTTTTTTT
CTCTTCTTCCTTTTTCTCTCCTTTTTTCTCTTCGCCTTTTTATTCTTTTC
TTCCCTTCTTATTCTTTCCCCGCTCCTTTCCATCCTCCCCCTTCTCTTTT
ATTACCCCTTCTCTCTTTTCCTCCCCCCCTCCCTCCTCTTACATATTCTC
TTTTGCCTTATTTTCTCCTCTCCTTATTATTCATACTCTTTACTCTTCTG
TTCTATCTCCTTTTTCTCTCTCCTACTTTTCCTTCTTTTTATTTCACCTT
CGCCTCTTCTTCCTTTCTTTCATTACTTAATTTTCTCTCTCTCTCTACTT
TCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_g02.g1 MSMg01no446_g02.g1 CHROMAT_FILE:
MSMg01no446_g02.g1 PHD_FILE: MSMg01no446_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:53 2005
         (245 letters)



>mm_chr17_36126609_36127253
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaatgttcactcccttcaatggctccaagaaggacatgattagtcctgtaacctgca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 ctaaaatgttcactcccttcaatggctccaagaaggacatgatgagtcctgtaacctgca 260

                                                                       
Query: 61  ctgccatacggagttagaaccacaccatgtgaccgtgcatgaaggttatgtacccagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgccatacggagttagaaccacaccatgtgaccgtgcatgaaggttatgtacccagaat 320

                                                                       
Query: 121 gttagaaaggaggaaaaggcgcaactaagaaaaatccagtctctaatctagggctctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagaaaggaggaaaaggcgcaactaagaaaaatccagtctctaatctagggctctttg 380

                                                                       
Query: 181 gcctcacaaacaacacacagttggccgttgtgtctgccccttgatgcttgtgttccctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcacaaacaacacacagttggccgttgtgtctgccccttgatgcttgtgttccctgt 440

                
Query: 241 cctct 245
           |||||
Sbjct: 441 cctct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)