BAC Information

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BAC

Clone NameMSMg01-448A21
Chromosome17 (Build37)
Map Location 36,837,387 - 37,043,465
singlet/doubletdoublet
Overlap geneLOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31
Upstream geneDdr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1
Downstream genePpp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448A21.T7 (MSMg01no448_a21.b1)MSMg01-448A21.TJ (MSMg01no448_a21.g1)
ACCAG536359AG536360
length752780
length of high quality
(start - end)		496 (40 - 535)404 (79 - 482)
definitionCHROMAT_FILE: MSMg01no448_a21.b1 PHD_FILE: MSMg01no448_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:10 2005CHROMAT_FILE: MSMg01no448_a21.g1 PHD_FILE: MSMg01no448_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:10 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(36,837,387 - 36,837,878)(37,043,062 - 37,043,465)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CAGCTCTGCCTGTGTTGGAGTAGAAGAGATGACTGGGGAATACACAAAGT
AAGGATCAGGATGAGGCTTGTTGCTGCCCATGACCTGCTTACACTGTGCT
CAGAGAAGGGAGACACATAGTCATAGTCAGATTTAGAAAGAGAAGGCAAC
ATGGGAGGAGAAACCAGACACTATGCGTAATGTCCAGGTACCACATTGAG
ACATATACCTTAACCTGTAGATAAAAAAGAACAAAGAAGAAACCCAGATA
TATGTCTTTAAATGGTGAGATAATTAACAATGCATCACTCACTCAAATGA
GTCCCCATCTCTCAGTGTTCTATCCTCTGTCACTCTCACAGATACACACC
AGGCCCTTTAGGATGTCATTTTTTAATGCTGTAACATAAAGCTGGGCACC
TAGGAAATTCACCTCACTGTGGCAAGCAAAGCAAAACTGGGTGTGCTCTT
TTCGATATTAATGCAAGTTTCTCGCGGATGAGCCACAACTATTATTACTG
ACTAGACTGAACATAGCTTTTTCCTGTTTAACCTGGAAACATGCTCTTAT
ATGGGAGGCCCTAGAGGCCGGCAGGATGAATACCAACCATCAGGGATCTC
CTGGTCCTTTTCCTCCAAAAACTGTCCCGAAATGTGGACTTCTCATCCCC
AAAAATCTGGTTGTAACCCGTGCCCTCGACGGTGGATTTTCTGCCCCCCC
GC

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGTAAGAGACTACCCTGGG
TGACATGATGAGATCCTGTCTCAAAATTTTGTATTGCTGTATTTCTGTTT
GCTTTCGTTTGTGTTGCTGTATTTTATGTTCTATTTTAATATTGTTTCTC
AGAGTCGGTGTGTATTCTTTATCTACACTATGTGAGAATGCTATATTCTG
GTGCCCAGGGGTACATGTAGTTAGCAGGAACCAAATTGGGAACATTCATC
TAGCTCCATGTTCACCACCTGATATTACAAAAATTCCGAAATTATGGGTA
CTTTGGCTCTGGGGATGTAGCTCAGAGTTCTTGTCCTGGGCTCCACTCTC
AGACAGCATTAAACCTGAGAGATTGCCTGTTACAACGCAGCACGAGAAAT
TTCTGGATATTGATGCTTTGGAAATACCCAGCATTCTACCTGGCTTCTGG
GAGGCCCAGGGTGCGTCTCGTGATGACCGATAAAATCCCAAGTCCAGGGA
GCATATGGCCTGTACATCGACCCCTTCCTTTTTATTTCTTGCCTCCATTT
TACCTCGGAACTCTGCCCCGCTCTTTTTTCTCTTTTCTTTTTTTCTTCAT
TGTTTTCCCTCTCGTCTTTCTCTTTCTTCTATTTCTCTTCTTTTCTTTCC
CCGTATCTTCCTCCCCTTTCCCTTCTCTTATACCTTTTCTCTTCCCTTTT
TTTTTTCCCCCCCTCTTCCTCCCCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_a21.b1 MSMg01no448_a21.b1 CHROMAT_FILE:
MSMg01no448_a21.b1 PHD_FILE: MSMg01no448_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:10 2005
         (496 letters)



>mm_chr17_36837183_36838078
          Length = 896

 Score =  920 bits (476), Expect = 0.0
 Identities = 488/492 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccagctctgcctgtgttggagtagaagagatgactggggaatacacaaagtaag 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagctctgcctgtgttggagtagaagagatgactggggaatacacaaagtaag 264

                                                                       
Query: 65  gatcaggatgaggcttgttgctgcccatgacctgcttacactgtgctcagagaagggaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatcaggatgaggcttgttgctgcccatgacctgcttacactgtgctcagagaagggaga 324

                                                                       
Query: 125 cacatagtcatagtcagatttagaaagagaaggcaacatgggaggagaaaccagacacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacatagtcatagtcagatttagaaagagaaggcaacatgggaggagaaaccagacacta 384

                                                                       
Query: 185 tgcgtaatgtccaggtaccacattgagacatataccttaacctgtagataaaaaagaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcgtaatgtccaggtaccacattgagacatataccttaacctgtagataaaaaagaaca 444

                                                                       
Query: 245 aagaagaaacccagatatatgtctttaaatggtgagataattaacaatgcatcactcact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaagaaacccagatatatgtctttaaatggtgagataattaacaatgcatcactcact 504

                                                                       
Query: 305 caaatgagtccccatctctcagtgttctatcctctgtcactctcacagatacacaccagg 364
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaatgcgtccccatctctcagtgttctatcctctgtcactctcacagatacacaccagg 564

                                                                       
Query: 365 ccctttaggatgtcattttttaatgctgtaacataaagctgggcacctaggaaattcacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccctttaggatgtcattttttaatgctgtaacataaagctgggcacctaggaaattcacc 624

                                                                       
Query: 425 tcactgtggcaagcaaagcaaaactgggtgtgctcttttcgatattaatgcaagtttctc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 tcactgtggcaagcaaagcaaaactgggtgtgctcttttcgatattaatgtaagtttctc 684

                       
Query: 485 gcggatgagcca 496
           | ||||||||||
Sbjct: 685 gtggatgagcca 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_a21.g1 MSMg01no448_a21.g1 CHROMAT_FILE:
MSMg01no448_a21.g1 PHD_FILE: MSMg01no448_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:10 2005
         (404 letters)



>mm_chr17_37042814_37043617
          Length = 804

 Score =  712 bits (368), Expect = 0.0
 Identities = 395/404 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagtaagagactaccctgggtgacatgatgagatcctgtctcaaaattttgtattgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tttagtaagagactaccctgggtgacatgatgagatcctgtctcaaaattttgtattgct 593

                                                                       
Query: 61  gtatttctgtttgctttcgtttgtgttgctgtattttatgttctattttaatattgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 592 gtatttctgtttgctttcgtttgtgttgctgtattttatgttctattttaatattgtttt 533

                                                                       
Query: 121 tcagagtcggtgtgtattctttatctacactatgtgagaatgctatattctggtgcccag 180
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 532 tcagagtcggtgtgtattctttatctacactacacgagaatgctatattctggtgcccag 473

                                                                       
Query: 181 gggtacatgtagttagcaggaaccaaattgggaacattcatctagctccatgttcaccac 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gggtacatgtagctagcaggaaccaaattgggaacattcatctagctccatgttcaccac 413

                                                                       
Query: 241 ctgatattacaaaaattccgaaattatgggtactttggctctggggatgtagctcagagt 300
           ||| ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 412 ctgctaagacaaaaattccgaaattatcggtactttggctctggggatgtagctcagagt 353

                                                                       
Query: 301 tcttgtcctgggctccactctcagacagcattaaacctgagagattgcctgttacaacgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tcttgtcctgggctccactctcagacagcattaaacctgagagattgcctgttacaacgc 293

                                                       
Query: 361 agcacgagaaatttctggatattgatgctttggaaatacccagc 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agcacgagaaatttctggatattgatgctttggaaatacccagc 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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