BAC Information

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BAC

Clone NameMSMg01-449P20
Chromosome17 (Build37)
Map Location 36,334,115 - 36,334,599
singlet/doubletsinglet
Overlap genenone
Upstream geneTnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127
Downstream geneEG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449P20.T7 (MSMg01no449_p20.b1)MSMg01-449P20.TJ (MSMg01no449_p20.g1)
ACCAG537828AG537829
length752739
length of high quality
(start - end)
484 (54 - 537)224 (84 - 307)
definitionCHROMAT_FILE: MSMg01no449_p20.b1 PHD_FILE: MSMg01no449_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:45 2005CHROMAT_FILE: MSMg01no449_p20.g1 PHD_FILE: MSMg01no449_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTATGCCCTTACTGGGCTAGAAATTATTGAATCATC
TTCCTCTGTCTCCCAGTCCTGGGATTAATGGTGTGCAGTGGCTTTTCTTA
CAACTTTCCTCCCTCAGCAGCAAGCAGAGCCTCCTTTCCCACCCACCCTA
GACAGTGTCCCTGGATCTCGAGCTCCAGGCTTTCACACACTGGGACCCCA
AAGAAGAAGTATACCAGCAGTCTCTGAACAAGACCAGGCTTAGTCCTGCA
CATGAAAAAGCCCACAAACAACTGGGCCCCAGCTTGGCCTGGAGCTGTTC
ACTTTCAGACACTGAGGGCTTCTTTTTCCTTGGGCCTGAGCCAGAGCCTG
AGGGCAGAGTGAGAAGCTGCCCTTGAGACCTGTGCCCCTCAGTTCCTCCT
TCCTATGCTCCAAGTGTCTGAGGAGTGATTCCATGCACTGGCTCTCCAGG
TAGGTCCTGTATCTTTCTGCCTCACCAGCCTCCACCAACTTTCTCTGGAT
GATGAGTGCTGCTGTGTTGTGTCCATCGCTGTCCTTGTTTCAGATCGGTG
TTCAGGGGGATGGAAATTGGGGAATCCCAAGGAAACTGGCTCTACCTGGA
AGGGAGGGGCTGTTTCCATTCACCTTTCAGGCCAATTTAATTTGGAGTGG
GGGAAAGTTTGGCCGACCTCCAAAATAATATCATATTGGGGGCCCCCCTC
CG
NAATTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGGCTAAAGAGAAA
GCCCATCTCCGTAGGATTTCCTATCTGGTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTAAACCATGGAAAACCATATCTGGATAAAACTGCC
CTTTCTGTTCTAGTAAACAACTAACAAAAAAGCCCTGAGCAGTAGGCTCT
GACTTTAAAATGTTAATTAGTACTGAATAGGTAACTTCCTAGTTGAATTT
TAAGTAGGGGGTTGGAATCCTGGCAAAGTTTTTTTTTATAAATTTAAAAT
GCACTTTATTATGAATAACACTGAGTGGATATTCCTCCTCATTATTGGAT
GACTGGCAGGAAACAGGGAGGAAAGGGAACGACAGGCACCTTAGTACAAT
GCCAATTGGCTTTTTTAGGGTGGAAGGCTGTGAAAGTCTTGCCCTTCCAA
AGAATGGTCTCCAACCTTTCCCCCCCCCCCCTATATATAATTTAATAAGC
CACCTTAAACTGAGGGGAACAAAGATTTTCCCTCCCGAAAAAAAGGGGGG
TTTTAACCTTGGCTTGGGTGGAACATAACAAAATCCTTCGTGGGGGGTGA
ATATAACCAACCCTTGTTTTTTTATAAATTTTGCGAAGTCACACTTCTTC
TCTCTCATATCTTGCTTTCACCCCCGAAATAATCATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_p20.b1 MSMg01no449_p20.b1 CHROMAT_FILE:
MSMg01no449_p20.b1 PHD_FILE: MSMg01no449_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:45 2005
         (484 letters)



>mm_chr17_36333916_36334799
          Length = 884

 Score =  791 bits (409), Expect = 0.0
 Identities = 464/485 (95%), Gaps = 5/485 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactatgcccttactgggctagaaattattgaatcatcttcctctgtctcccagt 64
           ||||||||||||||| |||||||||||| ||||  ||||||| ||||||||||||||| |
Sbjct: 200 gaattcactatgcccatactgggctagacattagagaatcattttcctctgtctcccaat 259

                                                                       
Query: 65  cctgggattaat-----ggtgtgcagtggcttttcttacaactttcctccctcagcagca 119
           ||||||||||||     |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 260 cctgggattaatcctggggtgtgcagtggcttttcttacaactttcctcccacagcagca 319

                                                                       
Query: 120 agcagagcctcctttcccacccaccctagacagtgtccctggatctcgagctccaggctt 179
            |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 320 ggcagagcctcctttcccacccaccttagacagtgtccctggatcccgagctccaggctt 379

                                                                       
Query: 180 tcacacactgggaccccaaagaagaagtataccagcagtctctgaacaagaccaggctta 239
           |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct: 380 tcacacactgggaccccaaagaagaaatataccagcagtctctgaataggaccaggctta 439

                                                                       
Query: 240 gtcctgcacatgaaaaagcccacaaacaactgggccccagcttggcctggagctgttcac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcctgcacatgaaaaagcccacaaacaactgggccccagcttggcctggagctgttcac 499

                                                                       
Query: 300 tttcagacactgagggcttctttttccttgggcctgagccagagcctgagggcagagtga 359
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 500 tttcagacactgagggcttctttttccttgggactgagccagaggctgagggcagagtga 559

                                                                       
Query: 360 gaagctgcccttgagacctgtgcccctcagttcctccttcctatgctccaagtgtctgag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaagctgcccttgagacctgtgcccctcagttcctccttcctatgctccaagtgtctgag 619

                                                                       
Query: 420 gagtgattccatgcactggctctccaggtaggtcctgtatctttctgcctcaccagcctc 479
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagtgattccatgcactggctcttcaggtaggtcctgtatctttctgcctcaccagcctc 679

                
Query: 480 cacca 484
           |||||
Sbjct: 680 cacca 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)