BAC Information

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BAC

Clone NameMSMg01-450P15
Chromosome17 (Build37)
Map Location 3,768,353 - 3,768,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3
Downstream gene4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P15.T7 (MSMg01no450_p15.b1)MSMg01-450P15.TJ (MSMg01no450_p15.g1)
ACCAG538575AG538576
length756756
length of high quality
(start - end)
571 (70 - 640)502 (79 - 580)
definitionCHROMAT_FILE: MSMg01no450_p15.b1 PHD_FILE: MSMg01no450_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:04 2005CHROMAT_FILE: MSMg01no450_p15.g1 PHD_FILE: MSMg01no450_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:04 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACCTTACCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTCA
ACATCTGTAATCATCAGGGAAATGCAAATCAAAACACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAGAATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAA
TTGGACATAGTACTACCTTTTTATCTCGCAATACCTCTCCTGGGCATATA
TCCAGAAGAGGTCCCAACCGGTAAGAAGGACACATGCTCCTCTATGTTAA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTATTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGT
TGGACCTGGAGGGCATCATCCTGAGTGAGGTATCCCAATCACAATGGAAC
TCACATAATATGTACCCACTGATAAGTGGATATTAGCCCAGAAACTTAGG
ATACCTTTGATATAAGATACAATTTGCTAAATGCATGATACTGACGAAGA
ATGAAAACCAAAGTGTGGACACTTTGCCCCTTCTTAAATTGGGAACAAAC
CACCAC
NCCGATGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATGTCAGGGGCATGAGGAT
AGAACTCCTCTAGCCTCATCTAGACAGATGAGGCACAAGAGAGCCAGGAT
CACAGTTACTTGGAAGGCTCCCTGGCTTCCTCTTTTCTACCTTTTGATTC
ATTCAGGATCCCACACCAGGGGATCCTGGTACCCACATTAAGAATGGGAT
TTTCCTTCCTAAGTTAAAACTCCCTAGAAATGCTCTCAGTGATAACCCCA
TAGCCTGCTTCATTTATGGCCAAGGTATTTCTTAAACCAATCAAATTATT
ACAATTAATCATCATACTTACTAAGTCAAAAAAAAAGCCTCTAATTGTGT
TCACAAGGAGACACACTGAGGTAGAACCTTGCTAGAAACACTGAGTATCT
GTCCTAGCTGATGGCTTAATGAATAATGGACATCTTGGATGTTAGAATAG
TATGTGACTCTTACTATTTTAATCAACTCTATACTGCCAACATAAACTTA
CCTTAAAATATTTGTCACCTTAAATGTGAAGTAGAACCAAGCATGTTAGC
ACACACCTTTAGTCTCTGTTTCCGGGAAGCAAAGACAGGCAGATCTATCT
CTGTGGGTTTCAGGCCAAACTGATCTACGTAATGAGTTCCAGGCCAATGA
GAGATGAATAGGATAATAATGGCCTAAAGAATAAATTTTAAACCTGAGTA
TTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p15.g1 MSMg01no450_p15.g1 CHROMAT_FILE:
MSMg01no450_p15.g1 PHD_FILE: MSMg01no450_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:04 2005
         (502 letters)



>mm_chr17_3768153_3769052
          Length = 900

 Score =  895 bits (463), Expect = 0.0
 Identities = 492/503 (97%), Gaps = 4/503 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgatgtcaggggcatgaggatagaactcctctagcctcatctagacagatgaggcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 ctgatgtcaggggcatgaggatagaactcctctagcctcatctagacagatgaggcacaa 641

                                                                       
Query: 61  gagagccaggatcacagttacttggaaggctccctggcttcctcttttctaccttttgat 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 640 gagagccaggatcacagttacttggaaggctccctggctccctcttttctatcttttgat 581

                                                                       
Query: 121 tcattcaggatcccacaccaggggatcctggtacccacattaagaatgggattttccttc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 580 tcattcaggatcccacaccaggggatcctggtacccacattaagaatgggtttttccttc 521

                                                                       
Query: 181 ctaagttaaaactccctagaaatgctctcagtgataaccccatagcctgcttcatttatg 240
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 520 ctaagttaaaactccctataaatgctctcagtgataacgccatagcctgcttcatttatg 461

                                                                       
Query: 241 gccaaggtatttcttaaaccaatcaaattattacaattaatcatcatacttactaagtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 460 gccaaggtatttcttaaaccaatcaaattattacaattaatcatcatacttactaagtc- 402

                                                                       
Query: 301 aaaaaaaagcctctaattgtgttcacaaggagacacactgaggtagaaccttgctagaaa 360
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 401 --aaaaaagcctctaattgtgttcacaaggagacacactgaggtagagccttgctagaaa 344

                                                                       
Query: 361 cactgagtatctgtcct-agctgatggcttaatgaataatggacatcttggatgttagaa 419
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cactgagtatctgttctaagctgatggcttaatgaataatggacatcttggatgttagaa 284

                                                                       
Query: 420 tagtatgtgactcttactattttaatcaactctatactgccaacataaacttaccttaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tagtatgtgactcttactattttaatcaactctatactgccaacataaacttaccttaaa 224

                                  
Query: 480 atatttgtcaccttaaatgtgaa 502
           |||||||||||||||||||||||
Sbjct: 223 atatttgtcaccttaaatgtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 900
Length adjustment: 10
Effective length of query: 492
Effective length of database: 890
Effective search space:   437880
Effective search space used:   437880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)