Query= MSMg01no451_i02.b1 MSMg01no451_i02.b1 CHROMAT_FILE:
MSMg01no451_i02.b1 PHD_FILE: MSMg01no451_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:47 2005
(664 letters)
>mm_chr17_61198535_61199598
Length = 1064
Score = 1191 bits (616), Expect = 0.0
Identities = 649/660 (98%), Gaps = 2/660 (0%)
Strand = Plus / Plus
Query: 5 gaattcagctcttaagatgaatagtcatacttgaattatataaaaatgcaatttaaaata 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcttttaagatgaatagtcatacttgaattatataaaaatgcaatttaaaata 264
Query: 65 tttacaagcttaatatatattagaaaagaggagagaataaaaataatccaaggagaatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttacaagcttaatatatattagaaaagaggagagaataaaaataatccaaggagaatgt 324
Query: 125 ggtagaatgaaagacataaggacaaatgataagaatgaaatgcaaaaattaaatattaga 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 ggtagaatgaaagacataaggacaaatgataagaatgaaatgcagaaattaaatattaga 384
Query: 185 gttattaaatgaataataccaaaaattaaatattagagttattaaatgaataatgcagtt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 gttattaaatgaataataccaaaaattaaatattagagttattaaatgaataatacagtt 444
Query: 245 ttatttttatgtttattctgtaatatgtgtacattatgtcatgtgttttgatcgtatgaa 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatttttatgtttattctgtaatatgtgtacattatgtcatgtgttttgatcgtatgag 504
Query: 305 ttcccaatatcttctcatgcgccttgcactcctgctgaacctcctgtccatcttagcaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcccaatatcttctcatgcgccttgcactcctgctgaacctcctgtccatcttagcaag 564
Query: 365 tggctctaccatgcatgtgcatacttaatcaaaaagagaaaacctacttgcaaagttgaa 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggctctaccatgcatgtgcatatttaatcaaaaagagaaaacctacttgcaaagttgaa 624
Query: 425 atttccaaagatattttaacaatactaagaaaatgagagaacaataaagatgaatataaa 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtttccaaagatattttaacaatactaagaaaatgagagaacaataaagatgaatataaa 684
Query: 485 tatgagagagcactgtgacacctcagactcttgatttgctgagatcatttcttttttttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatgagagagcactgtgacacctcagactcttgatttgctgagatcatttcttttttttt 744
Query: 545 tcatttttt-ccaatttttattagatattttcttcatttacaattcaaatgctattccag 603
|||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 745 -catttttttcccatttttattagatattttcttcatttacaattcaaatgttatcccag 803
Query: 604 caaaacagaaggaaccaaatttcacatgaatgagaagctgctatgtattttaacgagcaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caaaacagaaggaaccaaatttcacatgaatgagaagctgctatgtattttaacgagcaa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_i02.g1 MSMg01no451_i02.g1 CHROMAT_FILE:
MSMg01no451_i02.g1 PHD_FILE: MSMg01no451_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:47 2005
(647 letters)
>mm_chr17_61400526_61401572
Length = 1047
Score = 1096 bits (567), Expect = 0.0
Identities = 619/647 (95%), Gaps = 18/647 (2%)
Strand = Plus / Minus
Query: 1 tcacccgaggaataccgaatggctaagaagcacctgaaaaaatgttcaacatccttaatc 60
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 821 tcacccgaggaataccgaatggccgagaagcacctgaaaaaatgttcaacatccttaatc 762
Query: 61 atcagagaaatgcaaatcaaaacaaccctgagattccatctttcttcatttttaagggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 atcagagaaatgcaaatcaaaacaaccctgagattccatctttcttcatttttaagggca 702
Query: 121 gaatccctactatatggggccatatatatttatgattatatctgtccaagcttcaccact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaatccctactatatggggccatatatatttatgattatatctgtccaagcttcaccact 642
Query: 181 aagtatttatattgttagttaactagatctgcatgatataaatccttccactatatgtgt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 641 aagtatttatattgttagttaactagatctgcatgatataaatccttccactatatatgt 582
Query: 241 aagaacaataaaaaaaatgaaaccaaatgtttataaacccctcacatagaagaaccaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagaacaataaaaaaaatgaaaccaaatgtttataaacccctcacatagaagaaccaaaa 522
Query: 301 tatccagttctttgttgcctccttgtctattagctctgcccatatcctcaacacctcact 360
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatccagttctttcttgcctctttgtctattagctctgcccatatcctcaacacctcact 462
Query: 361 gtggagagtaaaacagagatcagagtagagaatgattggagttcttactttcagccttat 420
||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 461 gtgcagagtaaaacagagatcagagtagaaaatgattggatttcttactttcagccttat 402
Query: 421 agatagcatgcatggatgtctacatttttaatatgctagtaaaaataaatgtagtgaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agatagcatgcatggatgtctacatttttaatatgctagtaaaaataaatgtagtgaact 342
Query: 481 tcatagattaacttacatgtattaatatagaattatttatattatatttaactcttatta 540
|||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 341 tcatagattaacttacatgtattaatatagaattatttatat---------c-------- 299
Query: 541 tatatagttaatcatatattagtatttttatatatcaatgtgtcttcagataatagacag 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 -atatagttaatcatatattagtatttttatatatcaatgtgtcttcagataatagacag 240
Query: 601 ataccaaagatgaaaagataggtcctttgaagatactagacgctaca 647
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 atatcaaagatgaaaagataggtcctttgaagatactagacgctaca 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
