BAC Information

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BAC

Clone NameMSMg01-452C18
Chromosome17 (Build37)
Map Location 32,912,172 - 32,912,792
singlet/doubletsinglet
Overlap gene9030612M13Rik
Upstream geneSnf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809
Downstream geneZfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452C18.T7 (MSMg01no452_c18.b1)MSMg01-452C18.TJ (MSMg01no452_c18.g1)
ACCAG539487AG539488
length842752
length of high quality
(start - end)
---621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no452_c18.b1 PHD_FILE: MSMg01no452_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:39 2005CHROMAT_FILE: MSMg01no452_c18.g1 PHD_FILE: MSMg01no452_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAAATTNCCNNCCCCAAAAACAACTCACTATATCCANANNATCCNCGN
AAATCNCCATATTTTCTTGCANNCACCTTCAATACTTTGATCATTCTATT
TTTTCCTAAAAACTAAAACCACAAAACTCATTATGAATTATAAAGTTTTC
AATGAGTGGATGGTGTTGCTTTTTTCAATTGGACAAAAAACCAAAGGGGG
CTAAAACTTTTCTTGAAACCTCTGCTAAACTAAAATGGGNTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNTNN
NNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNN
NNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNANN
NANNNNNNNANNNNAAAAAAANNAAAAAAANNAAAAANNNNNAAAAANNN
NAAANAAANAAANANANAAAAAAAAAAANAAAAANNAAANNNNAANAANN
NNNAAAANANNAAAAAANANNNNAAAAAAAAAAAAAAAAANAANANNAAA
AANNNAANNAAANNNANNNNNANNNANNNANANNANNNNNAANNAANAAT
AAAAACAAANAAAAANNAAAAATAATATTTTATATATAATTG
NCCCCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATGTATTCGAAAGGAGCGGT
AAGTAATGAAGGCTTTACCACACGGTTTACACACATAAGGTTTCTCTCCC
GTGTGAATTCTTGTATGAATTTGAAGAGAGCTGTAATGACGTAAGGTTTT
CCCACAGTAATTGCACACAAAGAGGTCCCTAACCGAGTGAGTTCTTTTAT
GTGTTTTAAGGGAACGAGAATGAGCGAAGGTTTTCCCACACTGCAAGCAC
ACGTACGGTTTCTCCCCCGTGTGAATTCTTTCGTGTGTTTGTAGGTAAGT
GGGAAAAGCAAAGGCTTTCCCACACTGCTTACAGATATAGCATTTCTTGG
CCCGATGACGTCGTTCGTGCCTTCGAAAATACCTGGAGGAACTGAAACAC
TTCCCACACTGCTTACACTCAAAGGGCTTTTCTTCAGTGAAAGTCTTTTC
AACATTTTGGCCATATCTATAGTCTTCGTCACAACGCTCAGTTTTATAGA
TTCTCTCTACAGTATAAGTACTTTCATAGTTCTCAAATGATGTGAGAGAA
CTGGAGGGGGCCCCATATTCCATATTGTATAATTCCTTCCCATATTCCTG
ATCTTCGCACGATTCATGCTTTGGGTCAAGTTTAAGAAGTACACTTAGAG
ATAAATGGCCAATGACTACCGTTGCACATCCGCTGTTTTCACATATATAC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_c18.g1 MSMg01no452_c18.g1 CHROMAT_FILE:
MSMg01no452_c18.g1 PHD_FILE: MSMg01no452_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:39 2005
         (621 letters)



>mm_chr17_32911972_32912992
          Length = 1021

 Score = 1185 bits (613), Expect = 0.0
 Identities = 619/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatgtattcgaaaggagcggtaagtaatgaaggctttaccacacggtttacacacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatgtattcgaaaggagcggtaagtaatgaaggctttaccacacggtttacacacat 260

                                                                       
Query: 61  aaggtttctctcccgtgtgaattcttgtatgaatttgaagagagctgtaatgacgtaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtttctctcccgtgtgaattcttgtatgaatttgaagagagctgtaatgacgtaagg 320

                                                                       
Query: 121 ttttcccacagtaattgcacacaaagaggtccctaaccgagtgagttcttttatgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttcccacagtaattgcacacaaagaggtccctaaccgagtgagttcttttatgtgttt 380

                                                                       
Query: 181 taagggaacgagaatgagcgaaggttttcccacactgcaagcacacgtacggtttctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagggaacgagaatgagcgaaggttttcccacactgcaagcacacgtacggtttctccc 440

                                                                       
Query: 241 ccgtgtgaattctttcgtgtgtttgtaggtaagtgggaaaagcaaaggctttcccacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgtgtgaattctttcgtgtgtttgtaggtaagtgggaaaagcaaaggctttcccacact 500

                                                                       
Query: 301 gcttacagatatagcatttcttggcccgatgacgtcgttcgtgccttcgaaaatacctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttacagatatagcatttcttggcccgatgacgtcgttcgtgccttcgaaaatacctgg 560

                                                                       
Query: 361 aggaactgaaacacttcccacactgcttacactcaaagggcttttcttcagtgaaagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaactgaaacacttcccacactgcttacactcaaagggcttttcttcagtgaaagtct 620

                                                                       
Query: 421 tttcaacattttggccatatctatagtcttcgtcacaacgctcagttttatagattctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcaacattttggccatatctatagtcttcgtcacaacgctcagttttatagattctct 680

                                                                       
Query: 481 ctacagtataagtactttcatagttctcaaatgatgtgagagaactggagggggccccat 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctacagtgtaagtactttcatagttctcaaatgatgtgagagaactggagggggccccat 740

                                                                       
Query: 541 attccatattgtataattccttcccatattcctgatcttcgcacgattcatgctttgggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attccatattgtataattccttcccatattcctgatcttcgcacgattcatgctttgggt 800

                                
Query: 601 caagtttaagaagtacactta 621
           || ||||||||||||||||||
Sbjct: 801 caggtttaagaagtacactta 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)