BAC Information

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BAC

Clone NameMSMg01-452J01
Chromosome17 (Build37)
Map Location 8,739,709 - 8,740,333
singlet/doubletsinglet
Overlap genenone
Upstream geneFndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822, Rnaset2a, Fgfr1op, Ccr6, LOC667114, Brp44l, Sft2d1, LOC100038858, 9630019K15Rik, EG435502, LOC433063, T2, T, LOC100040817
Downstream genePde10a, 1700010I14Rik, EG667165, EG667170, LOC666143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452J01.T7 (MSMg01no452_j01.b1)MSMg01-452J01.TJ (MSMg01no452_j01.g1)
ACCAG539787AG539788
length753744
length of high quality
(start - end)
634 (49 - 682)510 (76 - 585)
definitionCHROMAT_FILE: MSMg01no452_j01.b1 PHD_FILE: MSMg01no452_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:09 2005CHROMAT_FILE: MSMg01no452_j01.g1 PHD_FILE: MSMg01no452_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAATGCATCACACCTGATTTCAGTTTCAGGGAGTCTAACTCC
TGCTTACAAAGCAAGCACAGTGACTGGCTGGGCCATCTCCCCAGCTCCCA
CGGTGACTTGTTTGTGGTGGCTAACGTATCTGTGGGCTGCCCTCTGGGTC
CCCCTCTTTAGCACCTGGCTTGGTGCCACCTTTCTGACAGGGCAGAAGCA
GTTTCCCTTGGTGGAAGGGGAGCACACAGAATGTGGCAGTCATGAAGAAT
GAAGAACCAAAGCTGGCCACCGACCTTCGGAGAGCCGTGGCTCTCCAGTG
TCTCGGGCCACAAGCAGCAGAAGTGGAGAAAAGAATAAGTGTGAACCGGT
GTCCCCAAGGCAGCTGTGCTCTGACAGGGGTTTCTACTCCTGCATTACTG
TTCATCTACAGATGTCTTCACCCCCTGAGAAAGCCAAGGCCAGGGCTGTG
TCTTTTATATATTGTGCTTTTTACTCTCTCAGTGTGCAGGATAGTGCCCA
AGACATGGTGGTGACCTAATTAATGAAGATGTCCTGATATAAAGTGACTT
GGTGGTGGGCCCTGGAGTGTGTGTGCTGGACTTAAATTCTTCTGATAAAA
GCATCATAGAGATGATCTAGCAAAGTGGCCCCAGAGAGACACTGGGAATT
GCCATGACAGTCATCAATGGCAGGCGCTCCATGGGGCTCTAGAAGGAGGC
TCT
CTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCAT
GAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GTCAGGATGAATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGAGAGAA
TTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAG
TTCTCTATCTTTGTTGGATCTTTCTGTGTATTAGGTATCAGAGTAATAGT
GGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAA
ATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAAC
TCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATT
AATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATGGTCAA
CTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCC
ATTTCGTCCAGGTTTTCCAGATTTGCTGAGTATAGCCTTTTGTAGAAAGA
TCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_j01.b1 MSMg01no452_j01.b1 CHROMAT_FILE:
MSMg01no452_j01.b1 PHD_FILE: MSMg01no452_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:09 2005
         (634 letters)



>mm_chr17_8739505_8740533
          Length = 1029

 Score = 1149 bits (594), Expect = 0.0
 Identities = 619/630 (98%), Gaps = 5/630 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgcatcacacctgatttcagtttcagggagtctaactcctgcttacaaagc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaatgcaccacacctgatttcagtttcagggagtctaactcctgcttacaaagc 264

                                                                       
Query: 65  aagcacagtgactggctgggccatctccccagctcccacggtgacttgtttgtggtggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcacagtgactggctgggccatctccccagctcccacggtgacttgtttgtggtggct 324

                                                                       
Query: 125 aacgtatctgtgggctgccctctgggtccccctctttagcacctggcttggtgccacctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||
Sbjct: 325 aacgtatctgtgggctgccctctgggtccccctctttagcacctgg-----tgccacctt 379

                                                                       
Query: 185 tctgacagggcagaagcagtttcccttggtggaaggggagcacacagaatgtggcagtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 380 tctgacagggcagaagcagtttcccttggtggaaggggagcacacaggatgtggcagtca 439

                                                                       
Query: 245 tgaagaatgaagaaccaaagctggccaccgaccttcggagagccgtggctctccagtgtc 304
           ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 tgaagaatgaagaaccaaagccggccaccgaccttcggagagccgcggctctccagtgtc 499

                                                                       
Query: 305 tcgggccacaagcagcagaagtggagaaaagaataagtgtgaaccggtgtccccaaggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcgggccacaagcagcagaagtggagaaaagaataagtgtgaaccggtgtccccaaggca 559

                                                                       
Query: 365 gctgtgctctgacaggggtttctactcctgcattactgttcatctacagatgtcttcacc 424
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgtgctctgaccggggtttctgctcctgcattactgttcatctacagatgtcttcacc 619

                                                                       
Query: 425 ccctgagaaagccaaggccagggctgtgtcttttatatattgtgctttttactctctcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccctgagaaagccaaggccagggctgtgtcttttatatattgtgctttttactctctcag 679

                                                                       
Query: 485 tgtgcaggatagtgcccaagacatggtggtgacctaattaatgaagatgtcctgatataa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgtgcaggatagtgcccaagacatggtggtgacctaattaatgaagatgtcctgatataa 739

                                                                       
Query: 545 agtgacttggtggtgggccctggagtgtgtgtgctggacttaaattcttctgataaaagc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtgacttggtggtgggccctggagtgtgtgtgctggacttaaattcttctgataaaagc 799

                                         
Query: 605 atcatagagatgatctagcaaagtggcccc 634
           ||||||||||||||||||||||||||||||
Sbjct: 800 atcatagagatgatctagcaaagtggcccc 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1029
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1019
Effective search space:   635856
Effective search space used:   635856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)