BAC Information

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BAC

Clone NameMSMg01-453F18
Chromosome17 (Build37)
Map Location 70,708,427 - 70,708,764
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
Downstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik, Myom1, Lpin2, Emilin2, LOC100043644, Smchd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F18.T7 (MSMg01no453_f18.b1)MSMg01-453F18.TJ (MSMg01no453_f18.g1)
ACCAG540391AG540392
length762778
length of high quality
(start - end)		633 (50 - 682)601 (76 - 676)
definitionCHROMAT_FILE: MSMg01no453_f18.b1 PHD_FILE: MSMg01no453_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:13 2005CHROMAT_FILE: MSMg01no453_f18.g1 PHD_FILE: MSMg01no453_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTAATAGTTGGTTGCTGATCTGAATTCACCCAACACACAGAAGC
TCTGATTAAGAATAATGGCACATAGACAAACTTCCTGCCTATATATTCAA
AGCTGATAGAGGAAATTTTTCTTTCTTTCTTTTAAAATTTATTTATTTAT
TTATTTTTATTTATTTTATTTTTTTAAAGATTTATTTATTTATTTATTAT
ATGTAACTACACTGTAGCTGCCCTCAGACACTCCAGAAGAGGGAGTCAGA
TCTCGTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACT
CCTGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCA
CCAGCCCTTAAAATTTATTTTTAATTAATTAACTTTTTACATCAAATGCT
ACCAGGTGCCAGTCTCCCTCCCCCCCAGAGACCTTTGCCCTCCCTCTCTC
CTTCTCCTTTGAGAAAATGGGACCCCCTTTGAGGATTCCCACCCTGGTAC
ATCAATCAAGTTTTTACCAGAGTAGGCATATCCTCTCTCACTGAGGCTAG
ACACGGCACGCCTGCTAGGAAATAGATATAATAGGAAATAATGTAAGGTT
ACAGTTTTAGGGAGAGCTTCTACTCTGGGGGTCCATAGTCTTAATTCATC
TGGACCCTCGAGATCTCTCAAACACTGGACCACCAAACAGACAGCATACA
CCAGCTCATATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTG
AGAAGCACCTGAAAAAATGTTCAGCATCCTTACTCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTTCATCTCACATCAGTCAGAATGGCTAAGAT
CAAAACCTTGGGTAACAGCAGATGCTGGTGAGGATGTGGAGAAAAAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTTAAAA
TCAGTTTGGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCC
AGCAATATCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGA
AGGACATATGCTCCACTATGTTCATATTAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGGACCCAGATGTCCCTCAACAAAGGAATGGATACAGAAAAT
GTGGTACATTTACAAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTTCTAGGCAAATAGATGGATGGAGGCAGGGGCAGGCAGATTT
CTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGG
GCTATACAGAGAAACCCTGTCTCTTAAAACCAAAAAAAAAAAAAAAAAAG
CAAGCTGAGAAAGCTAGTAAGCAGCTTCCCTCCATGGNCGCTGCATCTGC
TCCTGCTTCCAGGTTCCTGCCCTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f18.b1 MSMg01no453_f18.b1 CHROMAT_FILE:
MSMg01no453_f18.b1 PHD_FILE: MSMg01no453_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:13 2005
         (633 letters)



>mm_chr17_70708427_70709460
          Length = 1034

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/338 (98%), Gaps = 6/338 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaatt-aatagttggttgctgatctgaattcacccaacacacagaagctctgattaagaa 63
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaattcaatagttggttgctgatctgaattcacccaacacacagaagctctgattaagaa 279

                                                                       
Query: 64  taatggcacatagacaaacttcctgcctatatattcaaagctgatagaggaaatttttct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 taatggcacatagacaaacttcctgcctatatattcaaagctgatagaggaaatttttct 219

                                                                       
Query: 124 ttctttcttttaaaatttatttatttatttatttttatttatttta-tttttttaaag-- 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  
Sbjct: 218 ttctttcttttaaaatttatttatttatttatttttatttattttattttttttaaagat 159

                                                                       
Query: 181 --atttatttatttatttattatatgtaactacactgtagctgccctcagacactccaga 238
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 ttatttatttatttatttattatatgtaactacactgtagctgccctcagacactccaga 99

                                                                       
Query: 239 agagggagtcagatctcgttatggatggttgtgagccaccatgtggttgctgggatttga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  agagggagtcagatctcgttatggatggttgtgagccaccatgtggttgctgggatttga 39

                                                 
Query: 299 actcctgaccttcggaagagcagtcgggtgctcttacc 336
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  actcctgaccttcggaagagcagtcgggtgctcttacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space:   637952
Effective search space used:   637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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