BAC Information

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BAC

Clone NameMSMg01-454E09
Chromosome17 (Build37)
Map Location 23,899,755 - 24,041,635
singlet/doubletdoublet
Overlap geneFlywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2
Upstream geneLOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik
Downstream geneLOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454E09.T7 (MSMg01no454_e09.b1)MSMg01-454E09.TJ (MSMg01no454_e09.g1)
ACCAG541089AG541090
length753771
length of high quality
(start - end)
243 (320 - 562)240 (76 - 315)
definitionCHROMAT_FILE: MSMg01no454_e09.b1 PHD_FILE: MSMg01no454_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:25 2005CHROMAT_FILE: MSMg01no454_e09.g1 PHD_FILE: MSMg01no454_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:25 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(24,041,393 - 24,041,635)(23,899,755 - 23,899,993)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGA
ATTCTATAATACCAAAAAAAACAGAGCCAGGTGGTAGTGGCACATATCTG
TAATCCCAGCACTCAAACGTCAGGGGCAAGTGGATCTTTGTGAGTTTAAG
GCCAGCCTTAGTCTACAGAGAGAACTGGAGGACAGCCAAGTCTACACAGA
GAAACCGCATCTTGAAAAACCAAAATTGATTAATTTTGTTTTATTCTATT
AATCTTTTAAAACAAGATCTCTAAAAAAGAGAGAAAGAGAGAGACTTGGT
GATATAGTTCATTGTTTTGCTTTCCTCGATCCAATCTTGTATACCACAGA
CTATCATTATTATCGTCATGACATCCTTCCTTGTCATCCTCCTTGTTCCT
CCTCATCGTCATCGTCGTCCTCCTCCTCATCATCATCATCAAGAACTGGC
ATAGACAATTCAGCCTGTGAAGACTTAAAGGCATCTGCCCCCAACATAAA
GGATTTGATCCCTGGGAACTGCATACTGGAAAGGGAGAGGAAAAACTCCT
TAAAGTTGTTTTTGTGACATCCACATTCAAGACATTGTACACATACCCTT
TCACCCCCCTATCTAAAAAGGCGAGATGGGCACCGATACCTGTATTATTT
TCACCTTAAAAGGCCGAGGGTGGTAGAATCCGGGTTCATGATCCAACCAT
CTTGGGGTACTAACTTTGGTCTGGGGTAGGTTTTTAAGACCCGAAATTTA
TTT
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCGTACAGCTGCAGTTCTCATGAA
CCTGGAAGAAAGGGTTTAGTGCCCAGAACACTAAAAGTGCTTAGAGCCTA
CGAGTCAACTATAAGGACTGGGGTATCCAAAATCACCCTTGGATATGGAT
GGAGATGGGTATGCAGGTCAACAGATTTGCCAGAGCCAGGATGGCAGGTC
TAGGGAATCTCACCTGCATCTACCCTACTACGTTTCCGGTGAATTATCCG
TCCTTGCTTCTTGATTGTTGTTTCCTGGAGAGNATTGTTCGGNAGGGTTG
CAGTGCTATTCGTCTCCTGGGACGCGACATCTGTCGGCTTGGGTCTCTCT
TTATCCCTGGCCGGGACCATATTGGAGGACTCTTGAGGCTTCCTGGCTCC
AATAGATGGCTCCTGGTCAGCTCTCAGGTCCTCACTGTTCCTGCCCACCG
TTTTCTACGATATCTTTTCTGATGCCTATATTATGGCCCCCCTGGTTTCC
TTCTTTTCTTTGCCCCAGGGTTCCTCCTTTTCGCTGTTTGTTCCCCCCCC
CCTCCGCCTCTTTCACCTGATTCCCGCCCTATTATACCGGTGGCATTCTT
TTTTCTTCTTTTTTTTTCACCAACCTCTTTTTGTACTTTTTTCTTCGCAC
ACTCTTTTTTTTTTATATCTTTATCCGTTTGTTATGTTATTTTTCCGTCG
CATCCTTATCTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_e09.b1 MSMg01no454_e09.b1 CHROMAT_FILE:
MSMg01no454_e09.b1 PHD_FILE: MSMg01no454_e09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:25 2005
         (243 letters)



>mm_chr17_24041071_24041713
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcctcgatccaatcttgtataccacagactatcattattatcgtcatgacatccttc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 ctttcctcgatccaatcttgtataccacagactatcatcattatcgtcatgacatccttc 506

                                                                       
Query: 61  cttgtcatcctccttgttcctcctcatcgtcatcgtcgtcctcctcctcatcatcatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgtcatcctccttgttcctcctcatcgtcatcgtcgtcctcctcctcatcatcatcat 446

                                                                       
Query: 121 caagaactggcatagacaattcagcctgtgaagacttaaaggcatctgcccccaacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caagaactggcatagacaattcagcctgtgaagacttaaaggcatctgcccccaacataa 386

                                                                       
Query: 181 aggatttgatccctgggaactgcatactggaaagggagaggaaaaactccttaaagttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggatttgatccctgggaactgcatactggaaagggagaggaaaaactccttaaagttgt 326

              
Query: 241 ttt 243
           |||
Sbjct: 325 ttt 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no454_e09.g1 MSMg01no454_e09.g1 CHROMAT_FILE:
MSMg01no454_e09.g1 PHD_FILE: MSMg01no454_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:25 2005
         (240 letters)



>mm_chr17_23899555_23900194
          Length = 640

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcgtacagctgcagttctcatgaacctggaagaaagggtttagtgcccagaacactaaa 60
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 201 tgcgtacagctgcagttctcatgaacctggaagaaagggccaagtgcccagaacactaaa 260

                                                                       
Query: 61  agtgcttagagcctacgagtcaactataaggactggggtatccaaaatcacccttggata 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 agtgcttagagcctacgagtcaactagaaggactggggtatccaaaatcacccttggata 320

                                                                       
Query: 121 tggatggagatgggtatgcaggtcaacagatttgccagagccaggatggcaggtctaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tggatggagatgggtatgcaggtcaacagatttgccagagccaggatggcagggctaggg 380

                                                                      
Query: 181 aatctcacctgcatctaccctactacgtttccggtgaattatccgtccttgcttcttga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctcacctgcatctaccctactacgtttccggtgaattatccgtccttgcttcttga 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)