BAC Information

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BAC

Clone NameMSMg01-457B05
Chromosome17 (Build37)
Map Location 51,102,737 - 51,103,272
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneRftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457B05.T7 (MSMg01no457_b05.b1)MSMg01-457B05.TJ (MSMg01no457_b05.g1)
ACCAG543228AG543229
length7421,143
length of high quality
(start - end)		540 (49 - 588)---
definitionCHROMAT_FILE: MSMg01no457_b05.b1 PHD_FILE: MSMg01no457_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:08 2005CHROMAT_FILE: MSMg01no457_b05.g1 PHD_FILE: MSMg01no457_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTTGACCTTGCCCCTGAGACGATACATAACTTGAACTAAAG
AGAACTTTGTGCACATGGTGTGCCCTAACCCTCAGAATATAAATTGTCTC
AAACCCTGAATACAATTGGCCATTCTATGACAGAATGAAAACTTATTCCA
TAAAAGTAACTTTGCATTGAAGCATGTGGAATCCTGCAGTCAATTAAGGA
TCTTCAGTGGGTCTTACATGTTGTTAATATTACAAAGAAGTAACACTATT
TTGAATTTGTGAACAAAACATTGCTCTACATACGTTCTTTTGACATCTTG
CTCAATCATGGACCGTAGTTCTTTATCTTGAAAGAACTTGTTCCAAAGAC
TCTGGAAAAAACGAGAACAACCTAATTAGAATAATCTCACACTGCTTGAC
TTTTATGACTTCAATTTAGTAATATAAGTGGTTGAATTTATTCTTCTCTA
AGCTGTCATTTTGGATATCTTAGATAAGAATCTGAGACAGAAATAATTTT
TATTAAAATAAAAGTATCCATGTTTTAGTCCCTTACTGAGTGCACTTGTG
AAGTTTCTCTCGCCTCTGCAGGATGAAGGTACTACTGCCACTGCTTATTT
TTGAATCTCAGAAGAATATATATGAATGGTTAAAAAGGAAGCTTATAGGA
AAAGTCTTAAACTAACTTAAAACCGGGTACAGACCGCAAACN

TTGGGGTGTGTGTTTTGGGTGGTGGGGGNTGGGTGACGTGTGGGTCCTTG
TGGCTGCCGCTTTGTTGTTTACAAAATTGTTTTACTCATTATTTATGACA
AACTCCCGTTAAGACTCACTTAGACACTACATTCCACTCCTTCTGCTTCG
TTTGCATTTTTGGTTTTTGTTCTTTGGCTCCCCGCTCTATCATCACGATA
AAACGAAGATNGGTATACAATATTAATGGCGAGAATATGGATGCACACAA
CTGAGTTGTGTAGCGAAAGCCGCACACGCGCTTATTTTTTCCGGATTCTA
TTTATACTCGGTGCGCGTTTTTGGGGTGGGGGCGCGGGCGTGCGGCTCGC
TGTAGTTGGCTCCTTTCCCTCTCCCGGTGGCGGGATAAACCATATTCTTC
TGTTTCTTCGTAGTGCGCAAACGGTCGGCTGTGGTCGGTCTTNNGGGGGG
GGGTGTGGCTTAAAATGTNTCCGGGTTAAGGTAAATAGAGGTGGGGGNTT
AAAGGGNNNCCCCCTGGTGCCGGGGCCCCGGGCCCCCCGGGGGTTCGGGT
CGAGGACCACAATTTGTAAGAGGGGGGGGGAAAACCACCCCTTAATAAAG
GAAAAAGTNGAATCTTGTCCGGGGCGGGAAAANANTACCACCGCTGGTGA
GGAGAGAAAATAATTTTTATAATAAGATCTGCCGCGCTATAAAAAGAAAG
AAAGGGGCCCCGGGCTAAGAGGGGCCGGGGGGGAAAAAAAGGTGTGGAAA
TTTGGGGGAAAGTGAGGGGGGGTTAAAGAGGGGCTCTCCCCACCAATTTT
CTTCCTTAAAAAAACACCCAGAGGGGGGGTCCCCTCCCCCCCTGGGGGGG
GGGGGGGGTGTAATAAAAAAAAAACACCCCCCTGGGGGGGGAGGGGGCCC
CCGCGGGGAGAAAGGGGGGCCCTCAATAAAGGGGGGGGGGGGCGGGGGGC
CCTCTCTTATAAGGGAGGGGGTTTTTTTCGGGGGGGGGGGGTGGTTTCTC
ACAACAAACACGCGCGGGGAGGAGGAGGATATTTTGTGTTTTAAAAGAAA
AAAGAGAGGGGGGGGGGGGAGAATACCATTTTTTTTGGGGTGTGGAAAAC
AAATAAAAAGTATTCTTCCTCCGCGCGCGCGGGCGAGCGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_b05.b1 MSMg01no457_b05.b1 CHROMAT_FILE:
MSMg01no457_b05.b1 PHD_FILE: MSMg01no457_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:08 2005
         (540 letters)



>mm_chr17_51102533_51103472
          Length = 940

 Score = 1021 bits (528), Expect = 0.0
 Identities = 534/536 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgaccttgcccctgagacgatacataacttgaactaaagagaactttgtgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcatttgaccttgcccctgagacgatacataacttgaactaaagagaactttgcgc 264

                                                                       
Query: 65  acatggtgtgccctaaccctcagaatataaattgtctcaaaccctgaatacaattggcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatggtgtgccctaaccctcagaatataaattgtctcaaaccctgaatacaattggcca 324

                                                                       
Query: 125 ttctatgacagaatgaaaacttattccataaaagtaactttgcattgaagcatgtggaat 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 ttctatgacagaatgaaaacttattccataaaagtaactttgcattaaagcatgtggaat 384

                                                                       
Query: 185 cctgcagtcaattaaggatcttcagtgggtcttacatgttgttaatattacaaagaagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgcagtcaattaaggatcttcagtgggtcttacatgttgttaatattacaaagaagta 444

                                                                       
Query: 245 acactattttgaatttgtgaacaaaacattgctctacatacgttcttttgacatcttgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acactattttgaatttgtgaacaaaacattgctctacatacgttcttttgacatcttgct 504

                                                                       
Query: 305 caatcatggaccgtagttctttatcttgaaagaacttgttccaaagactctggaaaaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caatcatggaccgtagttctttatcttgaaagaacttgttccaaagactctggaaaaaac 564

                                                                       
Query: 365 gagaacaacctaattagaataatctcacactgcttgacttttatgacttcaatttagtaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagaacaacctaattagaataatctcacactgcttgacttttatgacttcaatttagtaa 624

                                                                       
Query: 425 tataagtggttgaatttattcttctctaagctgtcattttggatatcttagataagaatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tataagtggttgaatttattcttctctaagctgtcattttggatatcttagataagaatc 684

                                                                   
Query: 485 tgagacagaaataatttttattaaaataaaagtatccatgttttagtcccttactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagacagaaataatttttattaaaataaaagtatccatgttttagtcccttactg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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