Query= MSMg01no460_f08.b1 MSMg01no460_f08.b1 CHROMAT_FILE:
MSMg01no460_f08.b1 PHD_FILE: MSMg01no460_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:33 2005
(527 letters)
>mm_chr17_11400311_11401237
Length = 927
Score = 930 bits (481), Expect = 0.0
Identities = 519/543 (95%), Gaps = 20/543 (3%)
Strand = Plus / Plus
Query: 5 gaattctaaaattatttaatagacatcaagcattggaagagatagccataaaatcctttt 64
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattctaaaaatgtttaatagacatcaagcattggaagagatagccataaaatcctttt 244
Query: 65 gtctgtcactct--aaaaatacagctgcttttgtgtcctctttgtgatgtgggatgggtt 122
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtctgtcactctctaaaaatacagctgcttttgtgtcctctttgtgatgtgggatgggtt 304
Query: 123 ctgatagaacaggaatatgttgccctcttcaaa-ggagaaaagccaccatgctaagaaat 181
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 305 ctgataaaacaggaatatgttgccctcttcaaaaggagaaaagccaccatgctaagaaat 364
Query: 182 tgtattttaagagactgacaacacacactgagtacagtaggcattcc------------- 228
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgtattttaagagactgacaacacacactgagtacagtaggcattcctaccgtgtttgca 424
Query: 229 ----aatgtccatgaaagccattgtgacgtacaatactgtcatgttattggagcagagag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttccaatgtccatgaaagccattgtgacgtacaatactgtcatgttattggagcagagag 484
Query: 285 cttcatcaatcattgagtgcctactgctgtgtcttctgcatgccagcacacaacttaaat 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cttcatcaatcattgagtgcctactgctgtgtcttctgcatgccagcacacaacttaaat 544
Query: 345 agattgctgcatgaagacatagtgctaaaaagaggactggctgaggacagaaagcaaaca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agattgctgcatgaagacatagtgctaaaaagaggactggctgaggacagaaagcaaaca 604
Query: 405 tgagcgctacttagctctaaatatataggaacaccctatctttcttgtaagtgtcctgta 464
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 605 tgagcgctacttagctctaaatatgtaggaacaccctatctttcttgtaagtgtcctgta 664
Query: 465 aacaaagctgaaggggaattggagttttctacataaaaatatggatgctgactttattca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aacaaagctgaaggggaattggagttttctacataaaaatatggatgctgactttattca 724
Query: 525 act 527
|||
Sbjct: 725 act 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_f08.g1 MSMg01no460_f08.g1 CHROMAT_FILE:
MSMg01no460_f08.g1 PHD_FILE: MSMg01no460_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:33 2005
(452 letters)
>mm_chr17_11439273_11440124
Length = 852
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%)
Strand = Plus / Minus
Query: 113 ccagcagataatgaaggtcactcattctccacatcctctccaaccgttggtatcacattt 172
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 852 ccagcagataatgaaggtcactcattccccacatcctctccaaccgttggtatcacattt 793
Query: 173 cttgatcatagacattcttgctggtatgaggtcaaaattcacagtagttgtaatttacat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttgatcatagacattcttgctggtatgaggtcaaaattcacagtagttgtaatttacat 733
Query: 233 ttcttgatcactaggaatattgaacattttaaatatggggttattggtcctttgtgtctc 292
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttcttgatcactaggaatgttgaacattttaaatatggggttattggtcctttgtgtctc 673
Query: 293 ttccttcaaagagtgtcaataccatgagttctctctctgactggcaattttatctccttg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttccttcaaagagtgtcaataccatgagttctctctctgactggcaattttatctccttg 613
Query: 353 atgcttggcttttgcagctctttgtaaatcagtgcatcagccccttgtctaacacagctg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atgcttggcttttgcagctctttgtaaatcagtgcatcagccccttgtctaacacagctg 553
Query: 413 gggaagatggcctacatcctgtaagtgatttgcttctcag 452
||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gggaagatggcctacatcctgtaagtgatttgcttctcag 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
