BAC Information

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BAC

Clone NameMSMg01-460J11
Chromosome17 (Build37)
Map Location 20,977,564 - 20,978,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1
Downstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460J11.T7 (MSMg01no460_j11.b1)MSMg01-460J11.TJ (MSMg01no460_j11.g1)
ACCAG545912AG545913
length694697
length of high quality
(start - end)
550 (66 - 615)526 (76 - 601)
definitionCHROMAT_FILE: MSMg01no460_j11.b1 PHD_FILE: MSMg01no460_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:53 2005CHROMAT_FILE: MSMg01no460_j11.g1 PHD_FILE: MSMg01no460_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAAAGAGGATCCGCGGA
ATTCTACTTCACTCACAATGACATTGTCACCTTGACTTTAACACAATATT
TTCAAGTTCAAGATAGAATACAGTCTCAGTAGTCACCTTATGATTGTTTT
GACAGATAAAGCTCCTGCCCAGTCATAGATGTAGTGCTGTCTAGAAATGC
TACTTCCCTGGCAAGTCCCAATCTTGGCTTCTTCCTAAGATTAGATGAGT
TTTATAAATCCATTTCTAAGGTTTATTTGTAAACACAAAGTCATTTTCCA
AAATTTTATATTGTCACACTGCAAAATTACTCTATATGTACAATAAATGG
AAACCTGAATGAGGGAATTAACCTGAAACACCTTCAAAATCAGGTAAAAT
TACTAGATTTTACAGTTTTCAGTAGGTAGCCTGAAAGAGGATTTTGTTAC
ACTTTTGCTGCATAATGTGATAGTATACAAATTAGTATAGGTCAGAGACA
ATCACTTTTCCTTAGTAATTTGGTCTGCAGTCTATAAAGTCTTCCTGATC
ATTAACCAAGTCACAAGGCTTCTGTTTCTACCAAGAATCTATTTTCCAGA
GGTGGACATTTACCAGACCTTTGTTACATGAATTCACTGCTTTTGAGGAT
GAAAAACAAGAATCTCACCTGAAATTTTTCAGCTGTAGAAATTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACAGACAGAAAAGAGCTTTAAGGA
TAGTCCCCAATCCATATTTTAGGGACCCATAGCTGGATATCTGCTACATA
TGTTTAAGGGACATATTTTCAGCCTATGGTTGCTCTTTTGTTGGTGGTTC
AGTGTTGGAGAGTCCCCAAGGGTCCAGGTTATTTGACACTGTTGATCTTC
TTGTGTGGTTCCTATTCCCTTTGGGGCCTACAAACTTTTTCCTAACTCTT
CCATAGGAGTTCTCTATCTCCATCCAATGGTTTACTGTAGTTCTCTGCAT
CAATATAAGTCAGCTGCTGGGTGGAATCTCTCAGAAGACAGTTATGCTAG
GCTCCTGTCTGCACTCATAAAAGAATAACAGTAATAGTGTCAGGGATTTG
TGCTTGCCCATGGGATGGATCTCTGGTTGAGCTGGTTATTACTTTGCCAT
TCCCTCAGTCTATGCTCCACTCCCCATCCATATATATGTATACATATATA
TGGATGATCTTGCATCACACCTCTAGTATCTCCCCATGCCCTCTCCCACC
CAGTTTCATCCCTCAATCTACTGCTTATGGCTATTTTATTCCCCCCTTGA
AATAAGATTTAATCATCCTTATATGAACCTTTCTTCTTCTTTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_j11.b1 MSMg01no460_j11.b1 CHROMAT_FILE:
MSMg01no460_j11.b1 PHD_FILE: MSMg01no460_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:53 2005
         (550 letters)



>mm_chr17_20977364_20978313
          Length = 950

 Score = 1033 bits (534), Expect = 0.0
 Identities = 546/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgacattgtcaccttgactttaacacaatattttcaagttcaagatagaatacagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 750 caatgacattgtcaccttgactttaacacaatattttcaagttcaagagagaatacagtc 691

                                                                       
Query: 61  tcagtagtcaccttatgattgttttgacagataaagctcctgcccagtcatagatgtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tcagtagtcaccttatgattgttttgacagataaagctcctgcccagtcatagatgtagt 631

                                                                       
Query: 121 gctgtctagaaatgctacttccctggcaagtcccaatcttggcttcttcctaagattaga 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gctgtctagaaatgttacttccctggcaagtcccaatcttggcttcttcctaagattaga 571

                                                                       
Query: 181 tgagttttataaatccatttctaaggtttatttgtaaacacaaagtcattttccaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tgagttttataaatccatttctaaggtttatttgtaaacacaaagtcattttccaaaatt 511

                                                                       
Query: 241 ttatattgtcacactgcaaaattactctatatgtacaataaatggaaacctgaatgaggg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttagattgtcacactgcaaaattactctatatgtacaataaatggaaacctgaatgaggg 451

                                                                       
Query: 301 aattaacctgaaacaccttcaaaatcaggtaaaattactagattttacagttttcagtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aattaacctgaaacaccttcaaaatcaggtaaaattactagattttacagttttcagtag 391

                                                                       
Query: 361 gtagcctgaaagaggattttgttacacttttgctgcataatgtgatagtatacaaattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtagcctgaaagaggattttgttacacttttgctgcataatgtgatagtatacaaattag 331

                                                                       
Query: 421 tataggtcagagacaatcacttttccttagtaatttggtctgcagtctataaagtcttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tataggtcagagacaatcacttttccttagtaatttggtctgcagtctataaagtcttcc 271

                                                                       
Query: 481 tgatcattaaccaagtcacaaggcttctgtttctaccaagaatctattttccagaggtgg 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgatcattaacaaagtcacaaggcttctgtttctaccaagaatctattttccagaggtgg 211

                     
Query: 541 acatttacca 550
           ||||||||||
Sbjct: 210 acatttacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)