BAC Information

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BAC

Clone NameMSMg01-461C12
Chromosome17 (Build37)
Map Location 82,223,205 - 82,383,407
singlet/doubletdoublet
Overlap geneLOC100043707
Upstream geneC230072F16Rik, LOC675572, EG668830, Tmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832
Downstream geneLOC625467, LOC668836, EG433141, EG625514, LOC100043711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461C12.T7 (MSMg01no461_c12.b1)MSMg01-461C12.TJ (MSMg01no461_c12.g1)
ACCAG546345AG546346
length748765
length of high quality
(start - end)
233 (83 - 315)157 (74 - 230)
definitionCHROMAT_FILE: MSMg01no461_c12.b1 PHD_FILE: MSMg01no461_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:38 2005CHROMAT_FILE: MSMg01no461_c12.g1 PHD_FILE: MSMg01no461_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,223,205 - 82,223,436)(82,383,251 - 82,383,407)
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATTACCTGCGCGGN
AATCTTGTATTATCAAAACAACATTTTTGGNATCAAAATAGTTTTAAGTA
TATAGAATAAGTTATGTTGTGCTTTTTACTGGAACAGTTTATGTAAGTTA
AAATGTACAGAAATACAATGTCCTGAAGAAAATGATGGTGAAGCCAAATT
TCTCTAATATTGTCACTGAGCCAAGTGTTAAGTTAGTTATTAAATTTCTT
TTTATTAGTTATAATATTATTCTATCTTAGAATTTATTTTTACAGTATTT
GGTTGGATTTCTTATTTTANGTTGCTTTAANAATTTATATATATATATAT
GTAATTATTTTCACCTTTCTATCTGTTCTGTATTTATATTCTATGCTGAT
TTCATGACATATTTAACACCCTTTTAGTTTTATAAAGTCACTACATTATG
CATGTTTTTCTTTTTGTATAATATGGTTCTTGTAAATTTAGAAATGGCAG
CAATTTATTCCGTGTTTTTCTTTACGGATGTAAATTAACTAGTGCTTTGA
GACACCTACCTCTTCTGATATTGTACATGCCATTCCTACTAATTTATTTG
TTTACCACCGTCCCCCACATATCCCTCCGCTCACCTCCATTTTTTTTTTT
TTCATATGTAAACCTGCTTCACTATTCTCATATCTTTCCTCCCCTTTTTT
TATTCTTTATTTTTTTTCCTTCATCCCCACCATCCTTTTTTTCCTTTT
CGATGAATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCCTCCAGTCAAAATCTTACTCCTGG
GTTTATTTCATTTGCTTAACCAGTGACCTTGAATAGTGGGAATGGTTTCT
TTGCAGTGCATATGGAAACTTAAAGCAAAAGATGTTAAAAATATATTGTG
TGCAAGTGTTTTTAAAAAATTAATAAATGCTGTACCTAGTGATAAGTCAA
ATTGTTTCATTTTCTATCAAAAAAATGGATTTTTTCTATTACTTCAGTGT
TCAGTCCTTTCCGTTCTTTGCTTTGATCAGGCTCTGCCAATATTTTATGT
AACATATTGAGAGGTAAGTAATTTCGAAGGTTATTATCTACACTTTCTTA
CTGGTTTCCTTATCCTATATCCACTTTCCATATTATTCCCCAGGTCCATA
TTTCTCTGACTGTTTCTTCACCTATTTATAACTTTTCTAATTCATTATCT
TTAATAGTTGCTTCTTATACCTTCTATTTACCCCTTTCCATTATTTTTAC
TACCCCTCTTTCTTTTTACCTTACCCTCTCATGCCATTATATCTTCTTAA
CGATTTTATACCGTTTTGTTCTTCTTATTACTTTTTTTCATTCTCTCACC
TTTTTGTTTTTTTCTTCTTCTAAATACTCTTCGCCCTGCTCCTCCTTATT
TCCCCTCTGTGTTTCTCCGATCCTCTTTTTCCTCACATACACCTCTCCTT
TTTTCCCTCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_c12.b1 MSMg01no461_c12.b1 CHROMAT_FILE:
MSMg01no461_c12.b1 PHD_FILE: MSMg01no461_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:38 2005
         (233 letters)



>mm_chr17_82223005_82223637
          Length = 633

 Score =  387 bits (200), Expect = e-112
 Identities = 224/232 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaatagttttaagtatatagaataagttatgttgtgctttttactggaacagtttat 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 201 tcaaaatagttttaagtatatagaataagttatggggtgctttttactggaacagtttat 260

                                                                       
Query: 61  gtaagttaaaatgtacagaaatacaatgtcctgaagaaaatgatggtgaagccaaatttc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagttaaaatgtacagaaatacagtgtcctgaagaaaatgatggtgaagccaaatttc 320

                                                                       
Query: 121 tctaatattgtcactgagccaagtgttaagttagttattaaatttctttttattagttat 180
           |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct: 321 tctaatattgtcactgagccaagtgttaagttagttattaaatttcatagtattagttat 380

                                                               
Query: 181 aatattattctatcttagaatttatttttacagtatttggttggatttctta 232
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aatattattctattttagaatttatttttacagtatttggttgtatttctta 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no461_c12.g1 MSMg01no461_c12.g1 CHROMAT_FILE:
MSMg01no461_c12.g1 PHD_FILE: MSMg01no461_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:38 2005
         (157 letters)



>mm_chr17_82383051_82383607
          Length = 557

 Score =  288 bits (149), Expect = 1e-82
 Identities = 155/157 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcctccagtcaaaatcttactcctgggtttatttcatttgcttaaccagtgaccttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agcctccagtcaaaatcttactcctgggtttatttcatttgcttaaccagtgaccttgaa 298

                                                                       
Query: 61  tagtgggaatggtttctttgcagtgcatatggaaacttaaagcaaaagatgttaaaaata 120
           ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 297 tagtgggaatggtttctttgcagtgcatatggaaagttaaagtaaaagatgttaaaaata 238

                                                
Query: 121 tattgtgtgcaagtgtttttaaaaaattaataaatgc 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 tattgtgtgcaagtgtttttaaaaaattaataaatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)