BAC Information

Click to search

BAC

Clone NameMSMg01-464M16
Chromosome17 (Build37)
Map Location 55,340,365 - 55,340,688
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833
Downstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464M16.T7 (MSMg01no464_m16.b1)MSMg01-464M16.TJ (MSMg01no464_m16.g1)
ACCAG549123AG549124
length765749
length of high quality
(start - end)
321 (78 - 398)466 (74 - 539)
definitionCHROMAT_FILE: MSMg01no464_m16.b1 PHD_FILE: MSMg01no464_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:40 2005CHROMAT_FILE: MSMg01no464_m16.g1 PHD_FILE: MSMg01no464_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAATATTTGGGCGCTAAACGAANCACAGTACGTATCTGGCGNGGAAN
NCANGGCTTATCTNCATCGAGCATGNTTTCATTTGGTTGTTTGTTTTATT
TTAAATCACTTTATATTATTTATCTCATATTAGTTTAATCTTTGATCATA
GTTATAATAATTTCTTTAATTTCTTTTATGTCTTTTGATTTATTATTCTT
ATTCTTCTCTTGCTTTCTTTTGTTAATTTGGCTATGTCTTTCTTACTATT
GTTTATCCTTCAAACAGTAAACTTTTCATTTCACTGATTAATTATATTAT
GTTTATCATTTCTTTTTTTTTGCTTTATCATCTTATCTTAATTATATCTC
CATATCTTCTTTTAGGTTTAGTTATTTTTTTAATTTTCTCAGTGCCTCTA
TGTATATAAGTATTTTATTTCATCTAGATCTGATTTTTTTTAATGTAGCT
ACTTACAACTATAAGATTTTCTCTTAGTACTACTGTTATAAAACATAACA
TAATATATCATACCATATGGATGGTATATTGTGTTTTTGTTCTTCAGATA
ACTATAGAAGAGTTTTTGATTACTGTTTTCTTCTCTGCATCATTATTCTT
TTCCATTGTTTTTTTTTTTTTTCTTCTCGTCTCTTTTTCTGCTTCTTTTT
TCGCCTTTTCCTTTCCGTTCACTTATTCATTTCTTTCTTCTTTCCTCGTT
TCTTTTATCTTCCTTCGTTGTCTTCCCATTTTATTTCCTTTTTTTTCCCC
CCTCCACTTTCCTTT
CAATACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCTCAATACCTCCCAACTATATGC
TGGGATTTTGTCTGGTTTCAGCTTGTGATGGTCTTGTATGTACTGCCCAA
AGCACTGTAAGTTTAGATGTTCTCTGCTGGGTCTGGAAAATACAGTTTCC
TTGTATTTAGTAGTATTGACTTGAGATTCATACAGATTGTTATCAATAGT
TCATTTCTTTTCATCACTGAGTAATATTCTACATTGTGGATACACTATTA
CTTGTTTACCCTTTCTCTAAACTGGATTTTAATTTAGAACAATTGCTACC
AAAGCTTCTATTAACACTATATTTAGTTTTATTTTGTGCATTTAAAAATA
GTTACATTTTTGGGTTAAATGTCTAGGAAATGTATCACTGGTGCATATGG
TGAATTGATGTTTGGAAGAAATTATCTTTTTCAATTCCAGAATGGCTTTC
CAATTTTGCATTTTCATTATTAATGGATGAACAATCCCATTCCTCTGTAT
TCTCGTACTTAGTGTTGCCCTCCTGTTAATATTATTTTGTTTTAGTAAGT
ATAGAGTGGAAATTTGGTGGTATTTTATTTCACGGTTATCTTTCTTTAGC
CCCTTTATTTGTATTTATACGTTTACTGTCTCCCCTCTCGCTCCCACCCT
ATCCTTTTTTTCTCTCTTTGCCCCCTTTTCATCTTTTGTCCCTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_m16.b1 MSMg01no464_m16.b1 CHROMAT_FILE:
MSMg01no464_m16.b1 PHD_FILE: MSMg01no464_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:40 2005
         (321 letters)



>mm_chr17_55340170_55340889
          Length = 720

 Score =  509 bits (263), Expect = e-148
 Identities = 308/325 (94%), Gaps = 6/325 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatttggttgtttgt----tttattttaaatcactttatattatttatctcatattag 56
           |||||||| ||||||||    |||||| |||||||||||| |||||||||||||||||||
Sbjct: 196 ttcatttgtttgtttgtttgctttattataaatcactttaaattatttatctcatattag 255

                                                                       
Query: 57  tttaatctttgatcatagttataataatttctttaatttcttttatgtcttttgatttat 116
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 256 cttaatctttgatcatagttataataagttctttaatttcttttatgtcttttgatttat 315

                                                                       
Query: 117 tattcttattcttctcttgctttctttt-gttaatttggctatgtctttcttactattgt 175
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 316 tattcttattcttctcttgctttcttttagttaatttggctatgtctttctcactattgt 375

                                                                       
Query: 176 ttatccttcaaacagtaaacttttcatttcactgattaattatattatgtttatcatttc 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttatccttcaaacagtaaacttttcatttcactgattaattatattatgtttatcatttc 435

                                                                       
Query: 236 tttttttttgctttatcatcttatcttaattatatctccatatcttcttttaggtttagt 295
           | |||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 436 tatttcattgctttatcatcttatct-aattatatctccatgtcttcttttaggtttagt 494

                                    
Query: 296 tatttttttaattttctcagtgcct 320
           ||||||||| |||||||||||||||
Sbjct: 495 tattttttttattttctcagtgcct 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)