BAC Information

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BAC

Clone NameMSMg01-466F01
Chromosome17 (Build37)
Map Location 7,168,885 - 7,346,814
singlet/doubletdoublet
Overlap geneRnaset2b, Gm1604
Upstream geneTulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1
Downstream geneRps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a, LOC100040822, Rnaset2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466F01.T7 (MSMg01no466_f01.b1)MSMg01-466F01.TJ (MSMg01no466_f01.g1)
ACCAG550290AG550291
length850818
length of high quality
(start - end)
169 (73 - 241)316 (78 - 393)
definitionCHROMAT_FILE: MSMg01no466_f01.b1 PHD_FILE: MSMg01no466_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:45 2005CHROMAT_FILE: MSMg01no466_f01.g1 PHD_FILE: MSMg01no466_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(7,346,653 - 7,346,814)(7,168,885 - 7,169,200)
sequence
CTGCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACTGTTTTCCAACAGGACTCTAATAGCAGCTAAGGGTAAA
CCACGGTGACCATGGCAGTGTGCTCCCTCTTGCTTCAAGCATAGCTGACC
CACTCCTTAGTACACAAAGACAATGTTCCAAAATCATCTTATCTCCTTCT
CCTTCTCTGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCT
TCCTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTCGTCTTCTTGCTTCTT
CTTCTTCTTCGGCTCCTCCTTTTTTTCCTCCTCGACCACCGCGTCCTCTA
CTTGTTCTTCCTGTTTCTTCGTCTTCGTAATGGATTTTAATCTAGCTTCC
TCTTTCTTCGTACTTCTTGCTTTGTGCATCCGCCTGATCTCATCGTCCGT
TTATTTTTTTTTTTTCCTCCGCCCCCTTCCGTTCTTCTTCTAGGTTTTTT
TAGATATCCTTCATTTTTTCCCACAGGGGTAATATAAATGATTGGTCTCG
TTTTTCGACGCCCCCAAACAATTTTATTTTTGTGTTTACTTAAAAGCCAT
CAATTTTTTTTTTTTTCTCCTTCTATTTTGTACAATCTCTTTTGTTTTTA
ACTTTGTCTAAATTCAGAGCTTGCCCCTGCGTCTTATTACGTGGTGCCCC
CCTAGACAACAAGCCCTGACACTATATCTATTTATTTTGTGAGTAACACC
CAACACCTATTTTTGTTTTATTTGTTTCTCCTATTTACATCTCTTCTCTT
CTCTCCTGTTCCCTATTACATACACATATTGATTCTCCGGATGTGATGCN

TTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGGACTGGAATATGTCATTT
CTTTACTATTAAAAATGTGTCTGAAATCATGGGGATGTTAGTCTGGCTAC
TGGAGCACTAGCACCTTCTCAGTAGACGGGGAGCATCAGGCAGGTAGAGA
ACGGACGGGATGTTGTGGGTGGCCAGCCTGTGAGGCTCCTTAGATGCTTT
CAGACTGTGCGTGTGATGTGGCTGCTGGGGAAGGGGTACATCACTCTTCC
CCTGCTAGGACACTCGGCAGAGTGCACTGAAAGTGCTGAGTTCATTATTT
CCATGAAGAGTCTCGCACTAGGTTGTGGATGGTGGTTAAAGTTCCACATG
GGCTCTAGTGTTGTGTTGCGCTGCCCTTTAGTGCTCTGATACGTTGTTGA
CTATAGTTTGTCCCTTTATCTTTCTTCTGTTGCTCTTTTTTCCCTTTCTG
TCCCATGTTTACTCTCTTGCTAATTTGTTCTTATGTTTTTTTTTACTATG
TGTTTGCTCTCTCTCTTAGATATTCTCTCTCTTCCTCAGCCGTATCGCCC
CTCGCCCTTTCTCCTCGACGTGTGTTTATCTTTTCATTTTTTCTCTTTCT
GTTTGTTATCGTTCTCTAATCTCTCTCTTCTTTCTTTGTTTGTTTTTCTC
CCCTTTCTCCCTCTCTTGATTATGCCATACTCCTCTAACCTCTTACACCC
CGTACTTTTCTCTACCTTCTCTGCGCTCGAACTATCCCCCCAGTACTATC
ATTACTCTACCTACCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_f01.b1 MSMg01no466_f01.b1 CHROMAT_FILE:
MSMg01no466_f01.b1 PHD_FILE: MSMg01no466_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:45 2005
         (169 letters)



>mm_chr17_7346495_7347063
          Length = 569

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggactctaatagcagctaagggtaaaccacggtgaccatggcagtgtgctccctcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caggactctaatagcagctaagggtaaaccacggtgaccatggcagtgtgctccctcttg 261

                                                                       
Query: 61  cttcaagcatagctgacccactccttagtacacaaagacaatgttccaaaatcatcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttcaagcatagctgacccactccttagtacacaaagacaatgttccaaaatcatcttat 201

                                                     
Query: 121 ctccttctccttctctgcttcctcctcctcctcctcctcctc 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctccttctccttctctgcttcctcctcctcctcctcctcctc 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no466_f01.g1 MSMg01no466_f01.g1 CHROMAT_FILE:
MSMg01no466_f01.g1 PHD_FILE: MSMg01no466_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:45 2005
         (316 letters)



>mm_chr17_7168685_7169400
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggactggaatatgtcatttctttactattaaaaatgtgtctgaaatcatggggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggactggaatatgtcatttctttactattaaaaatgtgtctgaaatcatggggatg 260

                                                                       
Query: 61  ttagtctggctactggagcactagcaccttctcagtagacggggagcatcaggcaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtctggctactggagcactagcaccttctcagtagacggggagcatcaggcaggtag 320

                                                                       
Query: 121 agaacggacgggatgttgtgggtggccagcctgtgaggctccttagatgctttcagactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacggacgggatgttgtgggtggccagcctgtgaggctccttagatgctttcagactg 380

                                                                       
Query: 181 tgcgtgtgatgtggctgctggggaaggggtacatcactcttcccctgctaggacactcgg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgtgtgatgtggctgccggggaaggggtacatcactcttcccctgctaggacactcgg 440

                                                                       
Query: 241 cagagtgcactgaaagtgctgagttcattatttccatgaagagtctcgcactaggttgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagtgcactgaaagtgctgagttcattatttccatgaagagtctcgcactaggttgtg 500

                           
Query: 301 gatggtggttaaagtt 316
           ||||||||||||||||
Sbjct: 501 gatggtggttaaagtt 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)