BAC Information

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BAC

Clone NameMSMg01-466N14
Chromosome17 (Build37)
Map Location 63,297,284 - 63,297,444
singlet/doubletsinglet
Overlap genenone
Upstream geneEfna5
Downstream geneFbxl17, Ppia-ps17_1026.1, LOC638867, LOC668677, A930002H24Rik, Fert2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466N14.T7 (MSMg01no466_n14.b1)MSMg01-466N14.TJ (MSMg01no466_n14.g1)
ACCAG550699AG550700
length1,279820
length of high quality
(start - end)
---161 (129 - 289)
definitionCHROMAT_FILE: MSMg01no466_n14.b1 PHD_FILE: MSMg01no466_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:30 2005CHROMAT_FILE: MSMg01no466_n14.g1 PHD_FILE: MSMg01no466_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCCTCCCCACTCCCCTTGCACTGCCAATGNTGNGTGGGTGCTCATTTC
TCTCCACAAAGCACGCTGAGGCTTTCGCCCGTTTTTCTCTTCCCCCAACA
TACTTGTGCGTACTTACATAATGGATAGTATAATATGGTGCGACGGCGTC
GCGTGGCCCACTACCCCGCTATTATATGGACACCAACAAACGACACCACG
CACCATCGGCGCGCAGCCCTCCTACCCGATATATACCATACGCAGAACCT
AACATCAACAATTGGATCGATATACGCGCCAAGAGTGTAGCGAGNCATAG
TGTGATCACTCGGTGTGCTCTGTTTTTGATGAGCATTACTGACATAAAGC
TCCATTGTGATACGGTCATAGTTGTATACGAAGATACTCCTTAACGTCAC
ACATCTCTTGTCCACATTAATCATACTTCTCCAGTCCCAAACCGCGCCCA
TTACTTCCTCCTCTATTTATTAACTCCATTGTCTGATAGAATTCATGTTC
TACCCACCCCTCACCACATTAAATACTCCACACCTACCTCGTNCTGTCCT
CCAGCTACCCCATTCAGACTGTAGTCCTATGCTCTCGCTCTCGCGTCGCC
GTCGCCTGTGCTCAGCCGCGNATAATCATTCCGCGCTTCTTGCGCTCGAC
AGCGTCGCATCGCTTTCTTACCCCTTATCTCCTCCCTCTCCTGCATCGAG
CATCTGTTCTCGGCACGCCATTATCGCCACGTCGATGAGACCAACGCACA
CATCCTGACGACGCAGCTTATGATAAGCTCCTCGCCGCGCCTTATCGACG
CCATATAACGTGCGTGCAGCTATCTATTATATATTACCATTCCCATGTAC
TATTTCACACTGTTATACAACTATAGGCATCAATCGATATAGACCTGCAG
CGCTATAATCTGTCATCCGCACGTACTCATTATGACAGTACAATCTCTCT
CGCGATTCGGTTGTGCGCGTTCTATCAATATTATCTCTATCACACTAGTA
TAGATTTCGCCACAACGCTACTGCGGCTCTTATATCTATTTCGTTATGTC
CGCCATTATATCCAGTCTTTACGTTGTCTTTAAGCGTTTTACTCCGCACA
TATATACACCACTCTTCTTACCATCATCTCTAATTACTGATCGCGTTGTA
TTCGCGCCGCTATGTCATTAGATAGTAAATGGACCACCATCATTAGATAC
AGCACCCTATTGTATTCTCTATCCACATNGTCTGTCTATCATCACCGCGC
ACCACATATACTATGTATTCACGCTCATG
NCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGCTTAGAAAAGGAAAG
GGCAGGAAATTTTGGCATCTGGTTTCAGAGTATCTAAAAAAAAACCTATT
GTGTGAGTGGCAGTGAGCAGCTGCTTCGTGTTCCTACTCAGAGGAGGACA
GATGCTTTGGGTACTCCAGAGCTGTTAGGAACAGTCTCCAGACTAAAATT
GTTGCAATTGTGGAGCAAGGTAATATGTTGCCAATCAGAGGGCAGAGGGA
TGCATGCCTGTCTACGCTTGATGTTTATGGCGATGCTGACTTTGGAAGAC
CATGTATTTGATTTTTATGCCACTGCACACAAGCCTCACTGAGGATCTTA
TCTGTTCTGAGGAGTTTCTTCCCCCCCAACAATTTGCACTGTTCCTTTTT
ACCTCTCTTCTCGCCTCCTTTTTTCTCCCTATGCAGTTTGTTTCTCCTTT
TTCACTTCTTCCTCCATTCTATGTCCCTTCACTCCATTTCACCTTTCTCG
CTTCTTCTTTTTCACCCGTTTTTTTTTATTCCTCTTTCTCTTCCACTGTG
TTTCCTTTATCTTAAATATTCGTCTCTATTTCCTTCCTTTTGTCCTCTCT
TTTCCCCTCTCCCTCAACAACATTTATTTTTTTTTTTTTGCGCTAGTGTT
TCATTCTTGCTTAAGCCTATCATTGTTACTTAGTATTACACTGTCTTTTA
CTTTTATACTATCCTCCCTCTCTTTTTTATTCTAATTTTATCCCTCTCTC
TTACCTTCTTTTTCATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_n14.g1 MSMg01no466_n14.g1 CHROMAT_FILE:
MSMg01no466_n14.g1 PHD_FILE: MSMg01no466_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:30 2005
         (161 letters)



>mm_chr17_63297084_63297644
          Length = 561

 Score =  288 bits (149), Expect = 1e-82
 Identities = 158/161 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatctaaaaaaaaacctattgtgtgagtggcagtgagcagctgcttcgtgttcctact 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agtatctaaaaaaaaccctattgtgtgagtggcagtgagcagctgcttcatgttcctact 260

                                                                       
Query: 61  cagaggaggacagatgctttgggtactccagagctgttaggaacagtctccagactaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggaggacagatgctttgggtactccagagctgttaggaacagtctccagactaaaa 320

                                                    
Query: 121 ttgttgcaattgtggagcaaggtaatatgttgccaatcaga 161
           ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtgcaattgtggagcaaggtaatatgttgccaatcaga 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)