BAC Information

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BAC

Clone NameMSMg01-467C09
Chromosome17 (Build37)
Map Location 60,287,173 - 60,287,541
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043537, LOC100043542
Downstream geneLOC100043549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467C09.T7 (MSMg01no467_c09.b1)MSMg01-467C09.TJ (MSMg01no467_c09.g1)
ACCAG550927AG550928
length732736
length of high quality
(start - end)
51 (164 - 214)369 (177 - 545)
definitionCHROMAT_FILE: MSMg01no467_c09.b1 PHD_FILE: MSMg01no467_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:55 2005CHROMAT_FILE: MSMg01no467_c09.g1 PHD_FILE: MSMg01no467_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCTATGTTCCTTGACAGACAGAAAATCTCCATCGCAGTGGTTCTTAA
CCTTCCTAATGCTGGAGACCTTTAATATAATTCTGCATACTGTGATGATC
TCGCAACCATAAAATTACTGTTTTGCTCCTTCATAACTAATTTTCCTACT
TTTATGTATTGTGATGTAAATATTCTCTATGAAGGATATCACTAGTTGTG
ACCTTCCCAAGTGATGAGACCCACAGGTTGCTAACCACTGCTCTAAAAGC
AACTATCACACTTTTTCTTTTGGGACTAGACAAGAAAAATGTGTTTGCCT
GTGACTATTTCTGAATATGGTGGCAGGCTTTACACACAAGAGAACCAGAG
GAAAGGGGTCTGTTGTGCTTACTACTCTTCCCTTTCATTTCCTAGTCTGT
CTTGGTGCCAAAAGCAAGATCGTAGCTGATTATATCAAAGAATCACAGCA
TTCGAAGCAACAGTTCATTACTGAATTTGAATAATATTCGGTTATATTTT
TCTGAAATAATGATTGGCTTACTACTCTCTCATTATGCCCTTATTACTCG
CCTCCCTCCACTTCCCTCTTCCTAATTTTACCCTCTTATATCTTTTTCAG
AGTCCGAATATCTATCACTAATTATTAATAATATCCGCTAACTATTCCTA
CTTATTTCTTTCCTTTTTGCCTGTTTTCCTTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCACAAGATCAAAAACTCTAATACCT
CAACAACCTGAAAACATGCTTACACTCAAATACAAAGCATGTGGATTTGC
CATCACTCTTCTCCTGGATATTTGTATTTTTCTTTCAATACCAGTATGTA
TCTTCTGCATGACTTATGATATAGACACTTCAGATATACAAGGATATAAA
TGAACAAAATATTTAAAATTGTACTTAGATAATTCATTTTTCTTAGGCAA
AGAAGCATTATGTTATCTATTATTAAGCTTAACGGGGTTGTATAAAACCA
GTACCAAAGACACAAAGAAAATCTAAGAGGTACAATATAAAATAAGTTTA
TGTTTCAGATAAACCAGAAAGCACAATTCTATTATTCTACTGTTCTGCCA
CCTTATTTATAATTATTGTACATATAATTATATGTACATGTGTTTGTTTC
TAGTATCTCCTTGTATGTGGACATATATTCTCACAGGCACAGAGACTAGA
GTATGGGTCAGAGGACCTCCATTATCATTTTCAATCTGATTCACTTGTGA
TGCGGTCTCTCACTGTATCTGAAACTTGTTGTTTTTGGCTTCCTTAATTT
GCCGGGAATCCCTAATGATACTCCTTTAACTTGTTCTATCTCTCAAATAC
TGTACTTTCCTTGATAATGATTCTTCCCTTACCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_c09.g1 MSMg01no467_c09.g1 CHROMAT_FILE:
MSMg01no467_c09.g1 PHD_FILE: MSMg01no467_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:55 2005
         (369 letters)



>mm_chr17_60286973_60287741
          Length = 769

 Score =  638 bits (330), Expect = 0.0
 Identities = 360/370 (97%), Gaps = 2/370 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttt-tctttcaataccagtatgtatcttctgcatgacttatgatatagacacttcagat 59
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttttatctttcaataccagtatgtatcttctgcatgacttatgatatagacacttcagat 510

                                                                       
Query: 60  atacaaggatataaatgaacaaaatatttaaaattgtacttagataattcatttttctta 119
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atacaaggatatgaatgaacaaaatatttaaaattgtacttagataattcatttttctta 450

                                                                       
Query: 120 ggcaaagaagcattatgttatctattattaagcttaacggggttgtataaaaccagtacc 179
           |||||||||||||||||||||| |  |||||||||||||||||| |||||||||||||||
Sbjct: 449 ggcaaagaagcattatgttatcca-gattaagcttaacggggttttataaaaccagtacc 391

                                                                       
Query: 180 aaagacacaaagaaaatctaagaggtacaatataaaataagtttatgtttcagataaacc 239
           |||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 aaagacacaaaggaaatccaagaggtacaatataaaataagtttgtgtttcagataaacc 331

                                                                       
Query: 240 agaaagcacaattctattattctactgttctgccaccttatttataattattgtacatat 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 330 agaaagcacaattctattattctactgttctgccaccttatttataattattgtacctat 271

                                                                       
Query: 300 aattatatgtacatgtgtttgtttctagtatctccttgtatgtggacatatattctcaca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aattatatgtacatgtgtttgtttctagtatctccttgtatgtggacatatattctcaca 211

                     
Query: 360 ggcacagaga 369
           ||||||||||
Sbjct: 210 ggcacagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)