Query= MSMg01no467_j13.b1 MSMg01no467_j13.b1 CHROMAT_FILE:
MSMg01no467_j13.b1 PHD_FILE: MSMg01no467_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:31 2005
(238 letters)
>mm_chr17_74098634_74099271
Length = 638
Score = 416 bits (215), Expect = e-121
Identities = 232/238 (97%)
Strand = Plus / Minus
Query: 1 acaccattgggagnttcatcaatattggcataatggcctaatatctctacaaagctccca 60
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 acaccattggtagtttcatcaatattggtataatggcctaatatctctacaaagctccca 379
Query: 61 cgtaaagctatcagatcaatggatccgtatttgcaaacatgtggaatatgttttaacagc 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 378 cgtaaagctatcagatcaatggatctgtatttgcaaacatgtggaatatgttttaatagc 319
Query: 121 tttctgctacccagttggttggtacagctgcacagagcctgtgtgagcataccatatgga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 318 tttctgctacccagttggttggtacagctgcacagagcctgtgtgagcataccaaatgga 259
Query: 181 ctccatggggggaaactcattgagagttgcatgcagacctagcgacagcttggctgtc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctccatggggggaaactcattgagagttgcatgcagacctagcgacagcttggctgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space: 144041
Effective search space used: 144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_j13.g1 MSMg01no467_j13.g1 CHROMAT_FILE:
MSMg01no467_j13.g1 PHD_FILE: MSMg01no467_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:31 2005
(534 letters)
>mm_chr17_73875715_73876648
Length = 934
Score = 998 bits (516), Expect = 0.0
Identities = 530/536 (98%), Gaps = 4/536 (0%)
Strand = Plus / Plus
Query: 1 ctttggatcagctcagtacgccacaggctactcccatgtacacattcattcagttcatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttggatcagctcagtacgccacaggctactcccatgtacacattcattcagttcatca 260
Query: 61 acactccttccttcacgttttggtttctattaacagaccatcccatatcctcttccccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactccttccttcacgttttggtttctattaacagaccatcccatatcctcttccccta 320
Query: 121 gcactcaattaagatttaccctgtccatcaaccagaccaggtcctggttctgactctaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactcaattaagatttaccctgtccatcaaccagaccaggtcctggttctgactctaaa 380
Query: 181 gcagtgtctcttgcccttcctaatgctgcaaacttttaatacagttagttcttcatgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgtctcttgcccttcctaatgctgcaaacttttaatacagttagttcttcatgt-- 438
Query: 241 tgt--tgaccctggccataaaattattttcattgctacttcttaactgtaatgttgctac 298
||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 439 tgtggtgaccctggccataaaattattttcattgctacttcataactgtaatgttgctac 498
Query: 299 tcctatgaattataatgtaactagctgatacgcaggatgtctgatatgcaacccaccccc 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 499 tcctatgaattataatgtaactagctgatacgaaggatgtctgatatgcaacccaccccc 558
Query: 359 caccaaagaagctgagacccacagtgtcagaaccactactttaattcttctgagtccaca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 caccaaagaagctgagacccacagtgtcagaaccactactttaattcttctgagtccaca 618
Query: 419 ctgactcttgcgtagagaactgcaatggacctctaagccctcctcatctctgtttccttt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgactcttgcgtagagaactgcaatggacctctaagccctcctcatctctgtttccttt 678
Query: 479 ccttctgtgtatggctgcctatgctcttttttgctctgccaatctgaccatgctac 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccttctgtgtatggctgcctatgctcttttttgctctgccaatctgaccatgctac 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
