BAC Information

Click to search

BAC

Clone NameMSMg01-467N13
Chromosome17 (Build37)
Map Location 25,128,540 - 25,303,969
singlet/doubletdoublet
Overlap geneCramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317
Upstream genePrss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l
Downstream geneBC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467N13.T7 (MSMg01no467_n13.b1)MSMg01-467N13.TJ (MSMg01no467_n13.g1)
ACCAG551457AG551458
length722737
length of high quality
(start - end)		216 (355 - 570)577 (67 - 643)
definitionCHROMAT_FILE: MSMg01no467_n13.b1 PHD_FILE: MSMg01no467_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:50 2005CHROMAT_FILE: MSMg01no467_n13.g1 PHD_FILE: MSMg01no467_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,128,540 - 25,128,755)(25,303,393 - 25,303,969)
sequence
TTGCGGCGCTAAACGAACACACTTTTCGTACTGGGCGGAANCCNGAGGAT
AACAAAAAACGTGCCANCAAGCCNGCGGAAGCGAGNGGCAGNCCATGAAT
TTACCTTAGGACAAGGCAGGATGCTATCTCTACTCTCAACCATAATGCAG
ATAGTGTCTTTGGAACAGAAAAGGTCAAAAACAATGACTTAGAGGTCAGG
GTCAGATTAAGTGTTAAAAGGCAAGAAAAGATATTTGCAGCAGCTCAGGA
GCCAACACATCGAAGTACTAAGGCAAGAGAAAGAGAGCCCTAGGCCATCT
TTGTATTTGCAAGGGCAGGCACAGAGAAGGAATATCTGGGGTAATAAAAA
CATATGCCAAAGAGGACAGTGAGAAGTCTTAATTCTGTGGAGGGCTGGTT
AGAGGCTGAGCAGATGAAACACCTGCCTCATGTCCTTAACAGTCTTTATA
TTTAGTGTTGACACAACCAAGGGTCACCTGAAAGAGACCAGAACTGAATA
ACTGTTGAGATCAGACTGGCCAGTTATCTGTGAGTAACTCTTCACTGATG
ATTGATGTGGGAAGACCCAGCCCACTGCGGGCAGAATCATTCCTTAGCAG
GTAGCTTTGGTCTGTACCAAACAAGTATTTTTTTTTTTTATAGTGAGCAA
GCCAGTCAGCAGTATTCCTCCATGGTTTCTGCTTCAGGGTCAGTCCTGAC
TTAAGTTAGTGGCAAGTCATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATGCTGAGCTGGAGCCTCCATAAGAGAAGCTGG
TGTGGCCGGGTGTGGTGGCACCCGCCTTTAATCCCAGCACTCGGGAGGCA
AGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTCCAGACTGAG
TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAACCCCACCC
CCCAAAAAAAGAGAAGCTGGTGTGAAGACATCCCCCCCAGACATGTGGGA
ACACCCATGCATAGCTGCAGCAAGTGAGGGTGTGGGTGGGAATCCTAGAT
GTAACCCGTGGGCTGTGCCTCCTCCCCATGTTGCTCTCTTGCTGCTCTGA
GGGTCAGAAGGCACAGGACAGCCTTCTGTCCCCCCATCACACACACTCTG
TAGTATGGCTGTCTCCTTTGGGACTTGCCATAGCCAGTGCCATTATGTAG
TTGAGCAGTTGTGGTGACCTGTCGAGATCTTGGATTGCAGTCATGGCAAT
GACAAACAGCTCTGAGCAGATAGCTATCTATGGGAACGGGACTTAACAGT
CCCTCTGGGAGAGGGGAGGGAGAGCTATAGACCTTTCCCTGCAATACAAC
CACCACTCCCTCCTACCCACTACTCCAATGCTAAAGTATAAGAGGTGCAA
TATTGATGTTGGGGTCCTGGTTGCCTTTTTGGCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_n13.b1 MSMg01no467_n13.b1 CHROMAT_FILE:
MSMg01no467_n13.b1 PHD_FILE: MSMg01no467_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:50 2005
         (216 letters)



>mm_chr17_25128340_25128955
          Length = 616

 Score =  410 bits (212), Expect = e-119
 Identities = 215/216 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccaaagaggacagtgagaagtcttaattctgtggagggctggttagaggctgagcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccaaagaggacagtgagaagtcttaattctgtggagggctggttagaggctgagcaga 260

                                                                       
Query: 61  tgaaacacctgcctcatgtccttaacagtctttatatttagtgttgacacaaccaagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaacacctgcctcatgtccttaacagtctttatatttagtgttgacacaaccaagggt 320

                                                                       
Query: 121 cacctgaaagagaccagaactgaataactgttgagatcagactggccagttatctgtgag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cacctgaaagagaccagaactgaagaactgttgagatcagactggccagttatctgtgag 380

                                               
Query: 181 taactcttcactgatgattgatgtgggaagacccag 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 taactcttcactgatgattgatgtgggaagacccag 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 216
Length of database: 616
Length adjustment: 9
Effective length of query: 207
Effective length of database: 607
Effective search space:   125649
Effective search space used:   125649
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no467_n13.g1 MSMg01no467_n13.g1 CHROMAT_FILE:
MSMg01no467_n13.g1 PHD_FILE: MSMg01no467_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:50 2005
         (577 letters)



>mm_chr17_25303017_25303993
          Length = 977

 Score = 1108 bits (573), Expect = 0.0
 Identities = 576/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgctgagctggagcctccataagagaagctggtgtggccgggtgtggtggcacccgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 catgctgagctggagcctccataagagaagctggtgtggccgggtgtggtggcacccgcc 894

                                                                       
Query: 61  tttaatcccagcactcgggaggcaagaggcaggaggatttctgagttcgaggccagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 tttaatcccagcactcgggaggcaagaggcaggaggatttctgagttcgaggccagcctg 834

                                                                       
Query: 121 gtctccagactgagttccaggacagccagggctatacagagaaaccctgtctcaaacccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gtctccagactgagttccaggacagccagggctatacagagaaaccctgtctcaaacccc 774

                                                                       
Query: 181 accccccaaaaaaagagaagctggtgtgaagacatcccccccagacatgtgggaacaccc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 acccccccaaaaaagagaagctggtgtgaagacatcccccccagacatgtgggaacaccc 714

                                                                       
Query: 241 atgcatagctgcagcaagtgagggtgtgggtgggaatcctagatgtaacccgtgggctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 atgcatagctgcagcaagtgagggtgtgggtgggaatcctagatgtaacccgtgggctgt 654

                                                                       
Query: 301 gcctcctccccatgttgctctcttgctgctctgagggtcagaaggcacaggacagccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gcctcctccccatgttgctctcttgctgctctgagggtcagaaggcacaggacagccttc 594

                                                                       
Query: 361 tgtccccccatcacacacactctgtagtatggctgtctcctttgggacttgccatagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgtccccccatcacacacactctgtagtatggctgtctcctttgggacttgccatagcca 534

                                                                       
Query: 421 gtgccattatgtagttgagcagttgtggtgacctgtcgagatcttggattgcagtcatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtgccattatgtagttgagcagttgtggtgacctgtcgagatcttggattgcagtcatgg 474

                                                                       
Query: 481 caatgacaaacagctctgagcagatagctatctatgggaacgggacttaacagtccctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 caatgacaaacagctctgagcagatagctatctatgggaacgggacttaacagtccctct 414

                                                
Query: 541 gggagaggggagggagagctatagacctttccctgca 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 413 gggagaggggagggagagctatagacctttccctgca 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |