BAC Information

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BAC

Clone NameMSMg01-468A11
Chromosome17 (Build37)
Map Location 37,301,860 - 37,302,176
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93
Downstream geneOlfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468A11.T7 (MSMg01no468_a11.b1)MSMg01-468A11.TJ (MSMg01no468_a11.g1)
ACCAG551596AG551597
length793819
length of high quality
(start - end)		338 (82 - 419)433 (76 - 508)
definitionCHROMAT_FILE: MSMg01no468_a11.b1 PHD_FILE: MSMg01no468_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:04 2005CHROMAT_FILE: MSMg01no468_a11.g1 PHD_FILE: MSMg01no468_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATTAATTTGCGGCGCTGTACGACTCCTATATTTCTGACTACGCGGAAT
TCCTCTGCCCGTTACACCACACTATAGGANTCAGCAGCAGCAGCCACAGT
GCACGCGGGTTTTTCATATTAGCACTCAGGCGCTCTGACTAGTTCTTCGG
GTCCCTGCCCATAGCTCCAGGAAGAGCAGGCTGGGAAGGTGTGCTATCCC
GGCTTTCAGGTAGACAAATTTAACTTTCTCAGGACTTGGGACCTTGCCAG
AACACTCAGCATCTACTTGGCAAACAAGCTCCTCTTCCTCTTCTCTTTTC
TCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTC
TCTTCTCTTCTCTTCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTCTATT
CTCCTCCCCTCCCCTCTTCTCTCTTTTCTTGTCTCCTCTCCTCACCTCCC
CTCCCCTCCCGACTCCCCTGCTCTCCTTCCCACTCTCCTTCTCCTTTCTT
CTTTCTCTTTCTTATTTTCTATCTTCCTTTCTTTCCTTCTTTCTCTCTTT
CTTTCCCTTCTTTCTTACCTTTCCTTCTTTCCCTTCCTTTTTTTTTTTTC
TTTCGACCCTTTCTTTCTCCCTTCTTGTTCTCTCCCTCCTTCTACGACAT
CTCTATTCCTCTCGCCTTTTCCCTTGCTCTCGCCTTTTTTTGAATTTGTC
TTCTCCTAAAACTTCCCAACTCCCTTTTCCCCTTTTCTTTTATTCCCCTC
ATCCTCCCCCTTTTCGCTTTTTCTTGTTCGCCTGCCCTCTCCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGAATATGAAAGCCAGCA
TATCCTTGACAGATGTTATATAGACACTAAGAGAACACAAATGCCAGCCC
AGGCTACTATACTCAGCAAAACTCTCATTTACCATAGATGAAGAGACCAA
GAGATTCCACAACAAAACCAAATTCAAACAATATCTTTCCACAAATCCAG
CCCTTTAAAGGATAATAAATGGAAAACTCCAACACAAGGACAGAAATTAC
GCCCTAGAAAAACCAAGAAAGTAACCCTTCAGTTAATTATACATATTAAT
ATAATATAATAATTAACATAATTATATTATAATATAGTAATATAGTACTT
TCTGTTTCTATTTTTGTGGAATAGTTTGAGGAGAGTTGGAATTAGGTCTT
CTTTGAAGGTCTGCTAGAACTCTGCACTAAATCCATCTGGTCCTGGGCTT
TTTTTGTTTGTTAGTTTGGGAGATTATTTATGACTGCTCCTATTTCTTTA
GTGGAAATAGTATTCGCTTATTTCGTACCCTTTCTCTGCTTTTCTTTTTC
GCTCTTCTTTACTTGACTCTTCCTGCGCTCTTTTTACTTTCCGTCTTCCA
AAGCCGCTCAGTGTTGCTGTGTACCCTCTTTCTGTTATTCTCCTCTCATT
TTATTTACATCTCCTTCTTACTTATTTTATTTTATCACTTTTATATGTTA
TTAGGTATCCATCTCCACATACTTTTTTTCTCCTCCTTCCTATTCTCCCT
CGTCATATTACACTTCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_a11.b1 MSMg01no468_a11.b1 CHROMAT_FILE:
MSMg01no468_a11.b1 PHD_FILE: MSMg01no468_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:04 2005
         (338 letters)



>mm_chr17_37301660_37302397
          Length = 738

 Score =  526 bits (272), Expect = e-154
 Identities = 312/338 (92%), Gaps = 21/338 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcagcagcagccacagtgcacgcgggtttttcatattagcactcaggcgctctgacta 60
           |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||
Sbjct: 201 cagcagcagcagccacagtgcacgcgggtttttcataccaggactcaggcgctctgacta 260

                                                                       
Query: 61  gttcttcgggtccctgcccatagctccaggaagagcaggctgggaaggtgtgctatcccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttcgggtccctgcccatagctccaggaagagcaggctgggaaggtgtgctatcccg 320

                                                                       
Query: 121 gctttcaggtagacaaatttaactttctcaggacttgggaccttgccagaacactcagca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gctttcaggtagacaaatttaactttctcaggacttgggaccttgccagaacacacagca 380

                                                                       
Query: 181 tctacttggcaaacaagctcctcttcctcttctcttttctcttctcttctcttctcttct 240
           || ||||||||||||||||||||||||||||||||               ||||||||||
Sbjct: 381 tcaacttggcaaacaagctcctcttcctcttctct---------------cttctcttct 425

                                                                       
Query: 241 cttctcttctcttctcttctcttctcttctcttctcttctcttctcttcctcttcctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cttctcttctcttctcttctcttctcttctcttctcttctcttctcttcctcttcctctt 485

                                                 
Query: 301 cctcttcctcttctctattctcctcccctcccctcttc 338
           |||||||      |||||||||||||||||||||||||
Sbjct: 486 cctcttc------tctattctcctcccctcccctcttc 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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