Query= MSMg01no468_e18.b1 MSMg01no468_e18.b1 CHROMAT_FILE:
MSMg01no468_e18.b1 PHD_FILE: MSMg01no468_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:28 2005
(281 letters)
>mm_chr17_78511284_78511967
Length = 684
Score = 478 bits (247), Expect = e-139
Identities = 274/285 (96%), Gaps = 5/285 (1%)
Strand = Plus / Plus
Query: 1 atgcctttacattttcaaagtcattggcaaattctctttacaagtctctttacaagtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgcctttacattttcaaagtcattggcaaattctctttacaagtctctttacaagtata 260
Query: 61 caccaacttatatttacaccatcagg----atatatatatagggctgaatactgggagtt 116
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 261 caccaacttatatttacaccatcaggatatatatatatatagggttgaatactgggagtt 320
Query: 117 ttcagcaatgacttttttattatgatgaaataaatatatgcacatgaaaacaaactgtta 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagcaatgacttttttattatgatgaaataaatatatgcacatgaaaacaaactgtta 380
Query: 177 taaattatttcaacaatgaatgaatacaatgagttgggtgatgggggctgactactgtga 236
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 381 taaattatttcaacaatgaatgaatacaatgagttgggtgatagggg-tgactactgtga 439
Query: 237 caaattaatgaaggtattattgatggatagatggatgattagagg 281
|||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 440 caaattaatgaagggatgaaggatggatagatggatgattagagg 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 684
Length adjustment: 9
Effective length of query: 272
Effective length of database: 675
Effective search space: 183600
Effective search space used: 183600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no468_e18.g1 MSMg01no468_e18.g1 CHROMAT_FILE:
MSMg01no468_e18.g1 PHD_FILE: MSMg01no468_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:28 2005
(439 letters)
>mm_chr17_78679446_78680287
Length = 842
Score = 781 bits (404), Expect = 0.0
Identities = 421/428 (98%), Gaps = 3/428 (0%)
Strand = Plus / Minus
Query: 1 caatactggcaagggaggtgtgcaaacagtcaaatggcacagtgcatgcttcaaagccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 caatactggcaagggaggtgtgcaaacagtcaaatggcacagtgcatgcttcaaagccaa 569
Query: 61 ggcggatggggagggactgccaaggaagaaaatgggggccatttccttataaaacatctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcggatggggagggactgccaaggaagaaaatgggggccatttccttataaaacatctg 509
Query: 121 ccattcggatgcacgtatttatccaaaaagaatggttctgggtctgagtgcttcaaaatg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccattcgaatgcacgtatttatccaaaaagaatggttctgggtctgagtgcttcaaaatg 449
Query: 181 tcaaacttccaagagacaaacacatctgcaaaggaggccctctgatcgcctgtctgggag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcaaacttccaagagacaaacacatctgcaaaggaggccctctgatcgcctgtctgggaa 389
Query: 241 tgaagcaggtattcatagggccacgctcttcccacaacaactc---catcaaacatattt 297
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 388 tgaagcaggtaaccatagggccacgctcttcccacaacaactccatcatcaaacatattt 329
Query: 298 gcaagaaaatacagaagaaagagaaaagggtggtggcctctccaatggggcttgtgcacc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gcaagaaaatacagaagaaagagaaaagggtggtggcctctccaatggggcttgtgcacc 269
Query: 358 agggaattattcctctggttctctgatgagagtcctgaagtgagaagttacccaaagcag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agggaattattcctctggttctctgatgagagtcctgaagtgagaagttacccaaagcag 209
Query: 418 caagatta 425
||||||||
Sbjct: 208 caagatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 842
Length adjustment: 9
Effective length of query: 430
Effective length of database: 833
Effective search space: 358190
Effective search space used: 358190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
