BAC Information

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BAC

Clone NameMSMg01-468I14
Chromosome17 (Build37)
Map Location 85,716,916 - 85,876,765
singlet/doubletdoublet
Overlap gene1700106N22Rik
Upstream geneThada, Plekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901
Downstream geneEG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2, LOC100043903, Srbd1, LOC545228, Prkce
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468I14.T7 (MSMg01no468_i14.b1)MSMg01-468I14.TJ (MSMg01no468_i14.g1)
ACCAG551985AG551986
length768799
length of high quality
(start - end)		446 (73 - 518)248 (73 - 320)
definitionCHROMAT_FILE: MSMg01no468_i14.b1 PHD_FILE: MSMg01no468_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:47 2005CHROMAT_FILE: MSMg01no468_i14.g1 PHD_FILE: MSMg01no468_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,716,916 - 85,717,361)(85,876,518 - 85,876,765)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTAAATGCGCGGA
ATTCTTCAGAAGATGCCGCTGCCAAGGATGAGAGGCTCCGGACATCAGGC
AGGGCACAACAAGTGCATAGCCACTCACCCTGGTCCCCAAAGATGCCTGC
CATTGCTCACATAGCTCACATAGCTCATTTATAGCTATGCTCTGCCCTCA
CCCTTGAGGATTTGAGACCAACAAGGGAACCATCTGTCTAGCCATGTTGG
GCCCTCATGCCCTTTGTCCTCTGACCTCCAGCCTCCAGTCCTGCGTCCTG
TGAGTGTCCTTGCAGGGCAGCTCTCACTACACTGCCTTTCTGCCCTTGGC
CAAGAGCAACCCCGATGCTCCCTGCTTGGATGGTTGTGTTCTTCCAGGCC
AATCTCCTTAGCCAACTAAGTAGCCTTGGAAGAACACAAACATGCCCTCC
CCTTGTGTATTTTTATGAAGATGCTGTATGCTTCTTAGTTACATATCAAC
CCATTTTAGACCTTTAAGGCTTTTGCATGTATCTGCCAACTAATTATCCC
CTGGGAAGATGGTCAACTCTAGCGACGACTGCTCATTTTGTTGACTCTAG
CGCGGATGATTCATGTGAGAGCAATCTTAAACTATTGTTCTTTCAACTAG
ACGATACCCATGTTCTTTATATACTTCATCTTGTCCATCTAATTCCTTTA
TAAAACTTCCTCATTATTTATGTTCTTTTTAGTTATCCCNTAAGGGGAAT
ATTGTCTGGCTCCCTTTG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAATGCTTGTGAGAAAACTCCAAGGAA
ACAAGACAAACGACGTATGACCTTAGCTTCTTCAGAACATGGAGTTCTTG
GGATGTCTTCTTGTGCCCCTTGCAGGTGCAGCAGAAAAGAGTGAGTTCAC
CTCAGAGTCCTTACAAAGGACTGTTATTTGTTTATGTGCCCCTCTAGAAA
AAACACATTTTTTGCCATGTGTGGCTTGTCCTTGCAATTGTACACTTTAC
TGGTGTGGTCCTTAACCCACATTTTTCTTTGTGCCTGTTGCTCTGAATAA
AGTTGGCCACTATATGAAACTTTAGTCTGCCTCATTTAATGGCCGCATTC
TCCCCAGTCCTACTGCCTCTAGACGAATTACCACTGTCCACCACTTCACA
GACAGTTTGCGCACTGATCCTCGCTCACCTATATGCTATCTGCTGGCTCC
CTACAGACCCTCTTACCAGTCACTCTTCTTAGTTGTTGCTCTTGAACCTT
TCCCGCATGTTGTTACCTCTGTATTCTTTGTTTTTTTTGTCTTCAATAAT
TTGTCGCTCCCTCCGAGTTGCACGTATACTCTTTTCGTACTTATCCTGTG
TTTCTCCTTCCTTCGGACTCCTATCTCTTCCCTTTCTTCTCTCTTTTATT
CTCTTTTCGCTTCTTTCTCTCCTTTTTTCTTTCCCTCCTATCTCTCTTTC
TTCCCTCTTTTTTCTTTTTTATCTCCTCTTTTTATTTCTTTCTCTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_i14.b1 MSMg01no468_i14.b1 CHROMAT_FILE:
MSMg01no468_i14.b1 PHD_FILE: MSMg01no468_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:47 2005
         (446 letters)



>mm_chr17_85716716_85717561
          Length = 846

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggatgagaggctccggacatcaggcagggcacaacaagtgcatagccactcaccctg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 caaggatgagaggctccggacatcaggcagggcacaacaagtgcatggccactcaccctg 260

                                                                       
Query: 61  gtccccaaagatgcctgccattgctcacatagctcacatagctcatttatagctatgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccccaaagatgcctgccattgctcacatagctcacatagctcatttatagctatgctc 320

                                                                       
Query: 121 tgccctcacccttgaggatttgagaccaacaagggaaccatctgtctagccatgttgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccctcacccttgaggatttgagaccaacaagggaaccatctgtctagccatgttgggc 380

                                                                       
Query: 181 cctcatgccctttgtcctctgacctccagcctccagtcctgcgtcctgtgagtgtccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcatgccctttgtcctctgacctccagcctccagtcctgcgtcctgtgagtgtccttg 440

                                                                       
Query: 241 cagggcagctctcactacactgcctttctgcccttggccaagagcaaccccgatgctccc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 cagggtagctctcactacactgcctttctgcccttggccaagagcaaccccaatgctccc 500

                                                                       
Query: 301 tgcttggatggttgtgttcttccaggccaatctccttagccaactaagtagccttggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcttggatggttgtgttcttccaggccaatctccttagccaactaagtagccttggaag 560

                                                                       
Query: 361 aacacaaacatgccctccccttgtgtatttttatgaagatgctgtatgcttcttagttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacacaaacatgccctccccttgtgtatttttatgaagatgctgtatgcttcttagttac 620

                                     
Query: 421 atatcaacccattttagacctttaag 446
           ||| ||||||||||||||||||||||
Sbjct: 621 ataccaacccattttagacctttaag 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no468_i14.g1 MSMg01no468_i14.g1 CHROMAT_FILE:
MSMg01no468_i14.g1 PHD_FILE: MSMg01no468_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:47 2005
         (248 letters)



>mm_chr17_85876318_85876965
          Length = 648

 Score =  449 bits (232), Expect = e-131
 Identities = 244/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatgcttgtgagaaaactccaaggaaacaagacaaacgacgtatgaccttagcttctt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 448 tgaatgcttgtgagaaaactccaaggaaacaagacaaacgacatatgaccttagcttctt 389

                                                                       
Query: 61  cagaacatggagttcttgggatgtcttcttgtgccccttgcaggtgcagcagaaaagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagaacatggagttcttgggatgtcttcttgtgccccttgcaggtgcagcagaaaagagt 329

                                                                       
Query: 121 gagttcacctcagagtccttacaaaggactgttatttgtttatgtgcccctctagaaaaa 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 gagttcacctcagagtccttacaaagggctgttatttgtttatgtgcccctctagaaaaa 269

                                                                       
Query: 181 acacattttttgccatgtgtggcttgtccttgcaattgtacactttactggtgtggtcct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 268 acacattttttgccatgtgtggcttgtccttgcaattgtacactttactcatgtggtcct 209

                   
Query: 241 taacccac 248
           ||||||||
Sbjct: 208 taacccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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