BAC Information

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BAC

Clone NameMSMg01-469J16
Chromosome17 (Build37)
Map Location 68,765,910 - 68,766,267
singlet/doubletsinglet
Overlap geneD930040M24Rik
Upstream geneLrrc30, Lama1, Arhgap28
Downstream geneEG622645, Epb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469J16.T7 (MSMg01no469_j16.b1)MSMg01-469J16.TJ (MSMg01no469_j16.g1)
ACCAG552801AG552802
length753789
length of high quality
(start - end)
477 (44 - 520)358 (77 - 434)
definitionCHROMAT_FILE: MSMg01no469_j16.b1 PHD_FILE: MSMg01no469_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:14 2005CHROMAT_FILE: MSMg01no469_j16.g1 PHD_FILE: MSMg01no469_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTAAATTTGCGGCCGGTAAAAGACTCACATTCCAAAGAGGATCCGCGG
AATTCTATATTTCCCACCACCAAGCCACTCCATGGGAATGCAGAGCCCAG
CACCTTCTCCCTAGTGCACATGCACACAGAGATAGACACAGAGACACACA
TGCAGACAATCACACATGCACACACAAATGTGCACACATACACACATTCA
GACACAAACACCCAGACCCAGACACAAACACACATTCACACACACTCTCA
CGCACAGACATAACAATCACACAAACACAGACACACAGAGAGACACAGAT
ATACTCAGATGCAATCTGTTACCCACACGTGCATGTGTGCATACACAGAT
CTACACATACCACAGGCACAGTCACACACATGCATATAGACAGAAACACA
GACATATAGAGACATACACAGGCACACACTCTTAGACACACAGACACACA
CACACACACACACACACACACACACACACACACACAGAGCTCATGCAATG
CTCCCTCCCATACTTTCTTACCAACTTAAGAGGCACATGCCTTACTTATC
CCTATACTTTCCATCCCTTTCCCGGCTCTCAAACTTCTACCTCACGCCCA
GCAAGGCTCAAGCTCCCCTTCCCATTCTCCGGATCAGCATGCCCCATCTC
CCATTTCCCGAACCCTCCGACAGCTATGACCTGCTCCCCATAGCCCTGTG
TACCGAGATTTCCTCTTCGGGCATCTATCCGGCAGACTTGAGTCTTTTTC
TTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAAGACAAGACAACCTGTCA
GTCACCAAAAGACACTTAGTATGACCACTTAATCTGTTTTGTCATCTGAG
GGCTGCTGCAACATATGAATGTTACAGCCTCTTTGCCTCCTATAGGCACA
GCACAGCATGCAGAAATATTCCAAGCTGGCCATGGTCTCACAGTGCTGCT
TTGGTGAGTTCTGTGGCTACCGCCATCTTTCTTTCTTGACATTTTTCTTG
GATACTCTTATGCCTTTCTCTTCTATGTAGTGCTTTAAATTTCTTCCCCT
TGCTCGCATCAGTGTGCTAGGAAAGCCAGTAAACCTAAAGAGGTGTGCAT
GCGTGCGTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACTTT
CTTTCCTTCTCTCTTTTCACTCCTCTTTTTCCCTTTTTTTCTTTTCTTTC
CTTTTCACTTTTCTTTCTTCTTTTTTTTTCTTCTCTCCATACCACTCCCT
TCCCTTCCTTTTTTTATTTTTTCCTTTCCCCCCTTTTTTCCTTTTCCCTC
CTTCTTTTTCCTATGTCTTATTCTCCCCTTTTTTTTTTCTTTCCCCCCTT
TTTTTCCTTTTTTTTTACCCCCTTCCTTCTTTCCTTTCTCTCTTTTTTCT
CTTTTTTTTCCCCCCCCTTTTTTTTTTTTTCCCTCCTACTTACTTCACCT
TTTCCCCTTTTTTTTTTCCTTTTTTTTCCCCCTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_j16.g1 MSMg01no469_j16.g1 CHROMAT_FILE:
MSMg01no469_j16.g1 PHD_FILE: MSMg01no469_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:14 2005
         (358 letters)



>mm_chr17_68765710_68766467
          Length = 758

 Score =  677 bits (350), Expect = 0.0
 Identities = 356/358 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccaagacaagacaacctgtcagtcaccaaaagacacttagtatgaccacttaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccaagacaagacaacctgtcagtcaccaaaagacacttagtatgaccacttaatctg 260

                                                                       
Query: 61  ttttgtcatctgagggctgctgcaacatatgaatgttacagcctctttgcctcctatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgtcatctgagggctgctgcaacatatgaatgttacagcctctttgcctcctatagg 320

                                                                       
Query: 121 cacagcacagcatgcagaaatattccaagctggccatggtctcacagtgctgctttggtg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 cacagcacagcatgcagaaatattccaagctggcaatggtctcacagtgctgctttggtg 380

                                                                       
Query: 181 agttctgtggctaccgccatctttctttcttgacatttttcttggatactcttatgcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttctgtggctaccgccatctttctttcttgacatttttcttggatactcttatgcctt 440

                                                                       
Query: 241 tctcttctatgtagtgctttaaatttcttccccttgctcgcatcagtgtgctaggaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcttctatgtagtgctttaaatttcttccccttgctcgcatcagtgtgctaggaaagc 500

                                                                     
Query: 301 cagtaaacctaaagaggtgtgcatgcgtgcgtgcctctgtgtgtgtgtgtgtgtgtgt 358
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtaaacctaaagaggtgtgcgtgcgtgcgtgcctctgtgtgtgtgtgtgtgtgtgt 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)