BAC Information

Click to search

BAC

Clone NameMSMg01-470A09
Chromosome17 (Build37)
Map Location 26,914,502 - 26,914,745
singlet/doubletsinglet
Overlap genenone
Upstream geneNarfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik
Downstream geneBnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470A09.T7 (MSMg01no470_a09.b1)MSMg01-470A09.TJ (MSMg01no470_a09.g1)
ACCAG553122AG553123
length754787
length of high quality
(start - end)
241 (72 - 312)246 (80 - 325)
definitionCHROMAT_FILE: MSMg01no470_a09.b1 PHD_FILE: MSMg01no470_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:48 2005CHROMAT_FILE: MSMg01no470_a09.g1 PHD_FILE: MSMg01no470_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTGCGAGAACCGCGGAAT
TCAGGAACTTTTCCAAGAGTATCTCACTGATGATATGGAAGACCTAGTTC
ACCTAGCTCCTAAGAATACCCAACACTTTGAGAAGAGCCCTTGTAAAGAG
TGGTCTTCAAACTTAAGTCCTGAAGGAGAGCCCACCCACAGGAAAGTACA
TTTACTTTGCTTTTTTTATGGCCTCAGTATCACTCAAATTGGGGGTGTTT
TTTGTGAACAAGTTCAAGTCTTATGTGTCTGTGTATAGTCCAGAGGTCAG
CTTCAGGTGTCATCTCTTATTTACTGCCCTGNTTTGGGGACAGGCCTTGG
CTTCCTCTTTGGCCTGTGGGCCCCAGGGATCTACCAAGTGTCCACATCAG
ACCCTGCTGTTCACTTGCGTGTGGGGGACCAGACTCACGTCCTCATGCTC
ACCTGGCGCTCTAAAAAACTTGCCCTCTCCCCAGCCCTCAGCAGCTTCTT
TACCATCCCCACAGGATGCTATGTTCGCTTCGCCGCTCGCCCCCCCCCCT
TCTCCTTTCCTCCCCCCCCTCCCTTGCCTTCCTTCCTCCCTCCTCCCCCT
CTCCGCTCTCTCTCTCCTCTGCTTCTCTTCCCCCCACTTCCCCCCCCCCT
TTCTTTTTTCTCTCCTTACCCACCCCCCCCCCCCTCCCTTTCCCCCCCCC
CCCCCTTTTCCTCCCCTCTTTTCTTTTTTCCCCCTCTTCTTTTTCCCTTT
CCCT
TGCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAG
AGAAACCCTGTCTCGAAAAACCATAAACAAACAAACAAACAAAAAGAGCC
AGAACCAGCTGGACCTGGTGGGGAAGGCCCATAGTCAGCAGCATTGGGGA
AGGTCAGGAGTTCAAGGTCATCCTAGGTTGTATAGTAGGTTCCAGGACAG
CCTGGTGTCTCTTCAACAATAGCAACAACTATTCCCATTAAATAGCACCA
CTGTGGGTTCCAGGCCCAACATGGATTTTTGTTATGGTGCAGCAGCAAGC
ATGAACTCTGGATCTCTCAGGCCCTGGACGCCCTGCAGTCTGCCTGGCTG
GGGCTTACTCCTTCACTTCTCTGCCCTTTAACTTCCTGGCTTGGAAATGG
AGGGAGGCCTGGATCCTGCCTCTCAGGGACACCGAACAGTCCACGCCCAG
GTCCTGCGTGTCTGGTGTGCCGGAACCACTCAGCCATCGACTGCTGCTAA
CGCACCTCTGCCCACTTACCTGACTACCCCCTTTACACTCCCAATTCCTC
GTTCTAGTACCGCACCTCTCTTCCTGGCTTCCCCGCCCCCCCCTCACATG
ACCTCTCCCCTACCCGCNCTTCTTTTCTTTTTCTCCCTCTTCTCCCCCCA
CTATTCTTCCTCCTCTCTCTTCTCTTTCTTCCCCTTTATTATTCTCTCTA
CCTCCCCCTTACTAGCCTCCCCCCGCTTTCCTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_a09.b1 MSMg01no470_a09.b1 CHROMAT_FILE:
MSMg01no470_a09.b1 PHD_FILE: MSMg01no470_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:48 2005
         (241 letters)



>mm_chr17_26914302_26914945
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 236/248 (95%), Gaps = 11/248 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcactgatgat---atggaagacctagttcacctagctcctaagaatacccaacactt 57
           |||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tctcactgatgatatcatggaagacctagtttacctagctcctaagaatacccaacactt 385

                                                                       
Query: 58  tgagaagagcccttgtaaagagtggtcttcaaacttaagtcctgaaggagagcccaccca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgagaagagcccttgtaaagagtggtcttcaaacttaagtcctgaaggagagcccaccca 325

                                                                       
Query: 118 caggaaagtacatttactttgctttttttatggcctcagtatcactcaaattgggggt-- 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 324 caggaaagtacatttactttgctttttttatggcctcagtatcactcaaattgggggtgg 265

                                                                       
Query: 176 --gttttttgtgaacaagttcaagtcttatgtgtctgtgtatagtccagaggtcagcttc 233
             |    |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggg----ttgtgaacaagttcaagtcttatgtgtctgtgtatagtccagaggtcagcttc 209

                   
Query: 234 aggtgtca 241
           ||||||||
Sbjct: 208 aggtgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 644
Length adjustment: 9
Effective length of query: 232
Effective length of database: 635
Effective search space:   147320
Effective search space used:   147320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)