BAC Information

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BAC

Clone NameMSMg01-470L10
Chromosome17 (Build37)
Map Location 45,787,405 - 45,787,670
singlet/doubletsinglet
Overlap geneCapn11
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016
Downstream geneTmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L10.T7 (MSMg01no470_l10.b1)MSMg01-470L10.TJ (MSMg01no470_l10.g1)
ACCAG553652AG553653
length785807
length of high quality
(start - end)
172 (78 - 249)268 (76 - 343)
definitionCHROMAT_FILE: MSMg01no470_l10.b1 PHD_FILE: MSMg01no470_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:43 2005CHROMAT_FILE: MSMg01no470_l10.g1 PHD_FILE: MSMg01no470_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXCCCACATCCACAACTCCGCGGA
ANNCAGCGCCTTTCCCCCACACCGCAGAAGAACCGATTCCCCAAAATCAT
CCTCTGACTTTCACGTGTGTACCACACTACATATATGCACCCACTCCTCC
CTTAACACACACACGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAA
TGCAAAGACAAAACAAAAACCAACCCAGCAAACTATGTAGACAGGTGTGG
TGGCTCTTAACTCCAGTATTCAGGAGGCAGAAGCAGGCGGCCATCTTTTG
AGTTCAAGGCCAACCTGATCTATTTATAGCAAATTCCAGGCCAGCTAGGG
GTACAGCAGTATGACCCTGTCCTAGCACCAAACAAGCCCACCACACAAAA
AAACAAAACACCACCCAACCCCCCCGCAAACAAAAATAAAAATAACATCT
CTTTCCATCATTGCCGAAAGCACGGTAAATGCTTCAACCACTTAACACTA
CCCGTCCACCACCCCACAGCGCCCCCCCACCCCGACCCGATACCATCCCT
GCCCTGTATCTTCATGCATTCGCTGCACATCGATCTCCCCCCTCATGTCA
CGTTCCATTTATACACCCCGGCCCTTCATCAGCACTCCACCGCCCCCGTC
CTTACCCACCCCCCCTCTCTTCTCCCCCTACCCCCCACTCCCCCCCCCTT
TATATCCCCTTGCTACCCCCCCCCCCCCTCCTGCTCCCTCATTCGCCCTC
CCTCCTTGCCTCCCCACCTATTTCCCTCCACTTCT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAGGCTTGGCCAAGCTTTTGGGCC
CTGGCAGGCTTCTGTTATGACTTAGAGACCTCTGAGGCTGCAGGCAGGAA
GGAACACTAAAGGACTCTGCAGTCACCAACACAGGGCACTTAGGGGTCTC
TGATTCCCAGTCTCCTTTACCCAGCATTTCTCTGGCCCACTGAGCCACAG
AGGCAACTGTGGTCCCAGGGCTCCTTGGCCTCTGGCTGTACTTATTTCTG
CCCTTTTTCCTGCCACAGAGAGATTTTAAAGTGGTCTTGGCGCCTGTCCT
GGTGATGAAGGGTGGAGAGGAGACTGTGAGGCAAGACTAGCTCACGCAGT
ACCAGGCACTCTGCTCCCCCCCCTCTGTCCGTAGTACCGTTTGATCCCTT
GCGTTGACCCTCTCTGCCCTTTTTCCCCCCTTCCTTTCCTGTGATCCCAC
CCCCCCTCTTTTGTTTCTTCACTTCTTCTTCCCCTCCCTGATTTCTAGCC
CTTTTATTTTCTCTCTTTCGCCTCTTTTCCTTTTTCCCCTCTTTTTTCCC
TTCCCCCCTCCTCCTTACTTCCCCCCCCTTCCCCCTCTTTTCCTTTCTTT
TTCCCCCCCCTATATCCTACCCCATCCCCCTTCCTTTTTTTCTTTCCCCC
CTTTTTTTCCCTTTGCCCCTTGTTTCTCCCTCTCTCCTTCCCCTTTTCTT
TTTTATCTTTGATGCATGCCGGCCCCCTACTTCTTTCCCCGTTTCTATCC
CTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l10.g1 MSMg01no470_l10.g1 CHROMAT_FILE:
MSMg01no470_l10.g1 PHD_FILE: MSMg01no470_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:43 2005
         (268 letters)



>mm_chr17_45787205_45787873
          Length = 669

 Score =  468 bits (242), Expect = e-136
 Identities = 260/266 (97%), Gaps = 1/266 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggcttggccaagcttttgggccctggcaggcttctgttatgacttagagacctctga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ccaggcttggccaagcttttgggccctggcaggtttctgttatgacttagagacctctga 260

                                                                       
Query: 61  ggctgcaggcaggaaggaacactaaaggactctgcagtcaccaacaca-gggcacttagg 119
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ggctgcaggcaggaagggacactaaaggactctgcagtcaccaacacaagggcacttagg 320

                                                                       
Query: 120 ggtctctgattcccagtctcctttacccagcatttctctggcccactgagccacagaggc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctctgattcccagtctcctttacccagcatttctctggcccactgagccacagaggc 380

                                                                       
Query: 180 aactgtggtcccagggctccttggcctctggctgtacttatttctgccctttttcctgcc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgtggtcccagggctccttggcctctggctgtacttatttctgccctttttcctgcc 440

                                     
Query: 240 acagagagattttaaagtggtcttgg 265
           |||||||||   ||||||||||||||
Sbjct: 441 acagagagagaataaagtggtcttgg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space:   170940
Effective search space used:   170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)