Query= MSMg01no471_f20.b1 MSMg01no471_f20.b1 CHROMAT_FILE:
MSMg01no471_f20.b1 PHD_FILE: MSMg01no471_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:35 2005
(662 letters)
>mm_chr17_60106306_60107369
Length = 1064
Score = 1151 bits (595), Expect = 0.0
Identities = 644/663 (97%), Gaps = 6/663 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttcctctttacgagggactcttaagagaaagtgctttctggaattgcagacaa 63
||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 758 ggaattcttcctccttaagagggactcttaagagaaagtgctctctggaattgcagacaa 699
Query: 64 ggaaacccacaattaaatcataaccctcatgtccatatattctacttgcttgcctcttaa 123
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 698 ggaaacccacaattaaatcataaccctcatgtccacatattctactagcttgcctcttaa 639
Query: 124 ttactctggcttcctggttttcagggtttgcctgtcatgttgtggtttcttgaggcaaag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttactctggcttcctggttttcagggtttgcctgtcatgttgtggtttcttgaggcaaag 579
Query: 184 ttactataatcatattgctttttttttttaaccaactaacagagtgagtttaaattttct 243
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttactataatcatattgc--tttttttttaaccaactaacagagtgagtttaaattttct 521
Query: 244 tttgaataataaactacggcactttaaacagacaagtctggaataagagcggaaagatac 303
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 520 tttgaataataaactacggcactttaaacagacaagtctggaataagagcagaaacatac 461
Query: 304 at----ttaattcattttcaaatggtttttaaaaatgtctttatattttgtaagggcaaa 359
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 460 atttaattaattcattttcaaatggtttttaaaaatgtctttatattttgtaacggcaaa 401
Query: 360 cataatttatgtgtcattggcattttattcattttgactaattccctttttattggggta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cataatttatgtgtcattggcattttattcattttgactaattccctttttattggggta 341
Query: 420 tgtatacactacctaaaaataacatgtaatcaaatgctacaatatgttcaataaaagttg 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 340 tgtatacactacctaaaaatagcatgtaatcaaatgctacaatatgttcaatagaagttg 281
Query: 480 aaatgatcacttgtgattaattcatattttacaataaataatgttttaaataacaatgtc 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 280 gaatgatcacttgtgattaattcatattttaccataaataatgttttaaataacaatgtc 221
Query: 540 attaattcagatagcaaatatttatttctgctcataaggatatatccataattttaatga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 attaattcagatagcaaatatttatttctgctcataaggatatatccataattttaatga 161
Query: 600 tcttttctaatctaaaatgattgtgctagctccaagagtcaaagactaactaataaaaac 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 160 tcttttctaatctaaaatgattgtgctatctccaagagtcaaagactaactaataaaaac 101
Query: 660 aca 662
|||
Sbjct: 100 aca 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1064
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1054
Effective search space: 687208
Effective search space used: 687208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_f20.g1 MSMg01no471_f20.g1 CHROMAT_FILE:
MSMg01no471_f20.g1 PHD_FILE: MSMg01no471_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:35 2005
(550 letters)
>mm_chr17_59949073_59950022
Length = 950
Score = 1017 bits (526), Expect = 0.0
Identities = 544/550 (98%)
Strand = Plus / Plus
Query: 1 cattaacagtttgagagaaacatggaaattactggaaggctttgagtaagaaagaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattaacagtttgagagaaacatggaaattactggaaggctttgagtaagaaagaggagc 260
Query: 61 aatgctatttattttcctgtgagactagtgggactgtctacctgaatgtgctttgcaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgctatttattttcctgtgagactagtgggactgtctacctgaatgtgctttgcaatg 320
Query: 121 aatgacaaggagagaaaaaaggccaagcaaacataatgtaataatatctcatactttata 180
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 aatgacaaggagagaaaagaggccaagtgaacataatgtaataatatctcatactttata 380
Query: 181 tagaatatataatgtatgtatataataaacaattattaatattaaattaataacacattt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatatataatttatgtatataataaacaattattaatattaaattaataacacattt 440
Query: 241 ctaatatgttatatattgctatattaataacatatagtagtacaatatattattacatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaatatgttatatattgctatattaataacatatagtagtacaatatattattacatat 500
Query: 301 ttatatataatatttagaacaacgtggctatctggagatcaaagagcacgaattcataga 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 ttatatataatatttagaacaacgtggctatctggagatcaaagagcacgcattcataga 560
Query: 361 tgccaactaatcgagctttaaatattattatttcaaaattccaaattatagaagtgcaat 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccaactaatagagctttaaatattattatttcaaaattccaaattatagaagtgcaat 620
Query: 421 ttctggtcagagttgtggattatagtggaatctgtccatcctttgattgcaagattgcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctggtcagagttgtggattatagtggaatctgtccatcctttgattgcaagattgcag 680
Query: 481 gataacatcttgctcacttgcagcatgatgcatgtcaaataggatgaaaatttgggaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gataacatcttgctcacttgcagcatgatgcatgtcaaataggatgaaaatttgggaaga 740
Query: 541 cagcttcaga 550
||||||||||
Sbjct: 741 cagcttcaga 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
