BAC Information

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BAC

Clone NameMSMg01-472O22
Chromosome17 (Build37)
Map Location 93,585,395 - 93,585,834
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627395, LOC676141, LOC668877, LOC100043746, LOC100043747, LOC100043748, LOC100043907
Downstream geneAdcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472O22.T7 (MSMg01no472_o22.b1)MSMg01-472O22.TJ (MSMg01no472_o22.g1)
ACCAG555350AG555351
length794780
length of high quality
(start - end)		450 (48 - 497)431 (74 - 504)
definitionCHROMAT_FILE: MSMg01no472_o22.b1 PHD_FILE: MSMg01no472_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:44 2005CHROMAT_FILE: MSMg01no472_o22.g1 PHD_FILE: MSMg01no472_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCAATTATCTCTCAGTGTAGCCCTTCAAAGAAGTACAATTT
CCTCAGTAAAATTAAATGATACAGTAGGCAAAACCCTTAATGATGAGAAA
GTATTTATAATATATCATCAAATCAAAAGAGTGGGTTATTAACATCAATG
TTTAATATAATACTAATGTAAAAAAATCATTTACAGTTGTGAATGAAGGA
GATGCACAATAAAATTGTCCATTACTGGTGCTAGGAGTTAAATGGAAACC
TGTGTTGTATTTGTACTCTTTTTTATGCTGTGTCCTTTTCTTTCTGAGTT
TTTAAATGAGTGCTTTTATAAGATTCCTTTCTCTTTTTTTGTTTGCTTTT
ATTCTTGTTTTGAGATTCATTTTTAAACAAATGTCTAATGTGCAGCTTTT
CCCTTGATGCCTGTTCCATAAAGGTGTACCTTCCTCTTTTATTTAAATGG
CTTTTATTTATATGGAAGTAAAATAGTTGACTTTGTTTCCATAGTGCCAC
CCTTTGACTTCCCACTGGAAGGAAGGCTTAATTTAATAGATCTCAACGCA
ATATGAAAATATTCAATCCCGCTTGCTTATAAATGAAACCTGAACCTCCC
TATTTTAAAAAAAAAACCACCAGGCGAACAAGTCATGGTGGTCCCGTCAT
TCAACCATGTTTTATTTCAACGAACGTAATTATTCCCCCACTTTATCTCT
CCTATGGTGGGGATTCAATTTAATAGGGGGGCATAATTATATCC

NCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAATCCCATTTTTA
ATAGGGTTATTTGGTTTCCTGGAGTCCAACTTCTTGAGTTCTTTATATAT
ATTGGATATTAACCCCCTACTGAATTTAGGATTTGTAAAGATCTTTTCCC
AATTGGTTGGTTGCCTTTTGGTATTATTGACAGTGCCTTTTGCCTTACAG
AAGCTTTGCAATTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGCA
CAAGCCATTGCTGTTCTGTTCAGGAATCTTTTCCCTGGTCCCATATCTTC
AAGGCTCTGCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTATTA
TATGGAGTTCTTTGTTCCACTTAGACTTGAGCTCAGTACAAGGAGATAAG
AATGGATCAATTTGCATTTGTCTACATGCTAACTGCCTGTTAAGCCAGCA
CCATTTGTTAAATATGCCGATTTTTTTCCCACTGGTTTTAGCTCCTTTGT
CANAGTTCTTAGGACCAGAGGTGGGTGGTTTCACTTCCTGGGCCTCTATT
CTAATCCATTGAACCACATGTTTGTCTCTTGACCAAAAACCATCGGAGGG
TTTTTTTTTTTCTTTTTGTTGCTTTCCCTATATCCCTTTCCCTCTCCATT
TTTCTTTTCCCATTTCTTTCACTTCTCTATCTTTTCTTTCTTTCTTTATT
CATCTCTCACTTTCGTTCTCTCATTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_o22.b1 MSMg01no472_o22.b1 CHROMAT_FILE:
MSMg01no472_o22.b1 PHD_FILE: MSMg01no472_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:44 2005
         (450 letters)



>mm_chr17_93585191_93586038
          Length = 848

 Score =  824 bits (426), Expect = 0.0
 Identities = 438/442 (99%), Gaps = 2/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcaattatctctcagtgtagcccttcaaagaagtacaatttcctcagtaaaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gaattcattcaattat-tctcagtgtagcccttcaaagaagtacaatttcctcagtaaaa 586

                                                                       
Query: 65  ttaaatgatacagtaggcaaaacccttaatgatgagaaagtatttataatatatcatcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttaaatgatacagtaggcaaaacccttaatgatgagaaagtatttataatatatcatcaa 526

                                                                       
Query: 125 atcaaaagagtgggttattaacatcaatgtttaatataatactaatgtaaaaaaatcatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atcaaaagagtgggttattaacatcaatgtttaatataatactaatgtaaaaaaatcatt 466

                                                                       
Query: 185 tacagttgtgaatgaaggagatgcacaataaaattgtccattactggtgctaggagttaa 244
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tacagttgtgaatcaaggagatgcacaataaaattgtccattactggtgctaggagttaa 406

                                                                       
Query: 245 atggaaacctgtgttgtatttgtactcttttttatgctgtgtccttttctttctgagttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atggaaacctgtgttgtatttgtactcttttttatgctgtgtccttttctttctgagttt 346

                                                                       
Query: 305 ttaaatgagtgcttttataagattcctttctctttttttgtttgcttttattcttgtttt 364
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 345 ttaaatgagtgcttttataagattcctttctc-ttttttgtttgcttttattcttgtttt 287

                                                                       
Query: 365 gagattcatttttaaacaaatgtctaatgtgcagcttttcccttgatgcctgttccataa 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 286 gagattcatttttaaacaaatgtctaatgtgcagcttttcccttgacgcctgttccataa 227

                                 
Query: 425 aggtgtaccttcctcttttatt 446
           ||||||||||||||||||||||
Sbjct: 226 aggtgtaccttcctcttttatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space:   368720
Effective search space used:   368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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