Query= MSMg01no473_h04.b1 MSMg01no473_h04.b1 CHROMAT_FILE:
MSMg01no473_h04.b1 PHD_FILE: MSMg01no473_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:32 2005
(175 letters)
>mm_chr17_43139505_43140079
Length = 575
Score = 333 bits (172), Expect = 5e-96
Identities = 174/175 (99%)
Strand = Plus / Plus
Query: 1 caacttctggnccttcggcttctgtgtggcattacagttgagtgctatcacacttaatta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacttctggtccttcggcttctgtgtggcattacagttgagtgctatcacacttaatta 260
Query: 61 tgtcagaggcgtttttgtttgtttgtttgtgtttatgttttactttagcagtggctggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcagaggcgtttttgtttgtttgtttgtgtttatgttttactttagcagtggctggag 320
Query: 121 ttggggtggggttgggttactccagcagctcccaagaggatcagcctttcaggct 175
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggggtggggttgggttactccagcagctcccaagaggatcagcctttcaggct 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space: 94689
Effective search space used: 94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_h04.g1 MSMg01no473_h04.g1 CHROMAT_FILE:
MSMg01no473_h04.g1 PHD_FILE: MSMg01no473_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:32 2005
(469 letters)
>mm_chr17_43352148_43353016
Length = 869
Score = 683 bits (353), Expect = 0.0
Identities = 443/485 (91%), Gaps = 23/485 (4%)
Strand = Plus / Minus
Query: 1 tctatgaggccaagaaccgccttgaactcctgatctttctgccctgagagttgaaattat 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tctatgaggccaagagccgccttgaactcctgatctttctgccctgagagttgaaattat 483
Query: 61 ggacactcagacctccatactgttgttgttattgttattattattattattattatgaag 120
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 482 ggacactcagacctccacactgttgttgttattg------ttattattattattatgaag 429
Query: 121 attattttctggctggacttgacatatcttttttggtgtttgcacacatgtgcaaacata 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 428 attattttctggctggacttgacatatcttttttggtgtttgcacacgtgtgcaaacata 369
Query: 181 tatagaacagtggtcaaacctgtgtgtttttcatgtactagaaatgttgtgtgccaggcg 240
|| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 368 tagaggacagtggtcaaacctgtgtggttttcatgtactagaaatgttgtgtgccaggtg 309
Query: 241 gtggtggtttatgtttttaatcccagtacttgggaggcagaggcaggtgaatttctgagt 300
||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 308 gtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggtgaatttctgagt 249
Query: 301 tcgaggccagcccggtctacagagtaagttccaggacagtcaggactatacagagaaacc 360
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 248 tcgaggccagcctggtctacagagtaagttccaggacagccaggactatacagagaaacc 189
Query: 361 ctgtctcaaaaaa------aatcaatcaatcaatcaatcaataataaataaaatata--t 412
||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct: 188 ctgtctcaaaaaatcagtcaatcaatcaatcaatcaatcaataataaataaaaaataaat 129
Query: 413 a--------tgttgtaggcataatttccttaagagagttttgaagcgctcttttgtgtgc 464
| ||||||||| || ||||||||||||||||||||||||||| ||| ||||||
Sbjct: 128 aaaaataaatgttgtaggtatgatttccttaagagagttttgaagcgctgttt-gtgtgc 70
Query: 465 ctgct 469
|||||
Sbjct: 69 ctgct 65
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
