BAC Information

Click to search

BAC

Clone NameMSMg01-473K09
Chromosome17 (Build37)
Map Location 91,698,815 - 91,699,058
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235
Downstream geneLOC100043741, LOC100043742, EG640442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473K09.T7 (MSMg01no473_k09.b1)MSMg01-473K09.TJ (MSMg01no473_k09.g1)
ACCAG555898AG555899
length765770
length of high quality
(start - end)
245 (76 - 320)525 (72 - 596)
definitionCHROMAT_FILE: MSMg01no473_k09.b1 PHD_FILE: MSMg01no473_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:49 2005CHROMAT_FILE: MSMg01no473_k09.g1 PHD_FILE: MSMg01no473_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTTCCGACCCGCNGGATTC
CAGATTCAGTTTCAAAGACAGAAGAAAACATTAGGGAGGGGTAGGTGATC
TATATCATGATTGCTGGGTTCCGTCTGGGGGTCTGGGTGATGCTATGATT
CACACTAACTATTCTTGCTTCATACCAGAGAGGGTTAGCCCTTGTCCTCT
TGCCCACAATTTGGCTAGCTGTCCTTTCGCAGGTTGGGAAGGGGTACCTC
TTTCTTGTAACTGAATTGCCCACTTCTGGGGGTAAAACTCAGAGCTGGTC
TCCTAAACTACTAGTTTTCTAACTGATTTCAAGTCAGCCTGGCTCAGGCC
AATTCACTCCTTTCAAGTTGCTCGTTTGCTGTTTCTATATTTTACTTCAA
CCCTGAGATCAATTATTTGTTTGCCTTCTACTCCTTTTGGACATGGTTTC
TTTTTCGTCTGAAGCTTTCAGTTTTACTGTTATGTTACTAGTATGAAATC
AGTCCATTTTTTTATGTTGACACTTACTGCTTTAAACTTCCCTCTTAAAG
CAGCTTTCACAGTTTCCTTTTACTTTGGTTGCGCTGCTCATTCTTTATCA
TTTCTATCTTATACTGTTCCCTTTTACATTCCGTTTTACCTGTTTTTTCA
TTTTCTACCCTACTTTTTTTTTTTTTTCCTATTAGCTCTTCCCCTTTTTT
TCTTTTTTGCCCTTCTGCTTCTTTCTTTGGCTTATTTACCCGCCGTTTCC
TCTTCTGTGCTTCTT
AATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAACAAAAGGTTTTACTGTAGACCTTTTT
CATTCATGCTGTTGATTGCTAAATGTAATAGTCTGATCTAACACTGAATA
AATGTGTCTTTTTTTTTTACAAAAACAAAACACAACTTTTTGAATTATAG
AAAATATTCTACTCCTAAAACTATTGATACATGCAAAATTTCTCCATGGA
AAATATTCATAACCTTTTCTTCTGCCTTTTGGAAAGGACAATGTATGTTC
TCACAGAAAGCCACCTTCCTTCAGAAGCACAAAGTAAGAGGCAGTAGATA
TGTCAGACCTGATTTTAATATTACACAATTCATACACACAATGAACTATC
ACATTACAATGAAATATGTACAATTACTGATTTTTGTACTACCAAAAATA
AATTTGTTAAAAATAAAGAAAAATTAAAAAAATAATATTAATTAATGAAA
GTTGAAAAGTATTATGTCCTTAAATGTAAATACTAAAGTTCAGATTCTAA
CAAAGAAGTCCATTTATGCAATTTGAGTCTAAAAAGGATTCCTCGGGAAA
CCCAATACTAAACATAGAACATTTGGTAAGTCGATTTTCATTAAAATTAA
GATAATATTTTATTTAAAAGACAACCTGATCAAACGTACCTTTAATAGAT
CTTAAAAAACTGTTTTAACATATTACTCCCCATGGGAGTTATAACTGTAA
TATACCACAATATCAATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_k09.b1 MSMg01no473_k09.b1 CHROMAT_FILE:
MSMg01no473_k09.b1 PHD_FILE: MSMg01no473_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:49 2005
         (245 letters)



>mm_chr17_91698615_91699259
          Length = 645

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacattagggaggggtaggtgatctatatcatgattgctgggttccgtctgggggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaacattagggaggggtaggtgatctatatcatgattgctgggttccgtctgggggtctg 385

                                                                       
Query: 61  ggtgatgctatgattcacactaactattcttgcttcataccagagagggttagcccttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtgatgctatgattcacactaactattcttgcttcataccagagagggttagcccttgt 325

                                                                       
Query: 121 cctcttgcccacaatttggctagctgtcctttcgcaggttgggaaggggtacctctttct 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 324 cctcttgcccacaatttggctagctgtcctttcgaaggttgggaaggggtacctctttcc 265

                                                                       
Query: 181 tgtaactgaattgcccacttctgggggtaaaactcagagctggtctcctaaactactagt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtaactgaattgcccacttctgggggtaaaactcagagctggtctcctaaactactagt 205

               
Query: 241 tttc 244
           ||||
Sbjct: 204 tttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)