BAC Information

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BAC

Clone NameMSMg01-473M01
Chromosome17 (Build37)
Map Location 39,145,080 - 39,145,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135, Olfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985, LOC100043297
Downstream geneLOC100043300, EG668200, LOC672857, LOC627695
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473M01.T7 (MSMg01no473_m01.b1)MSMg01-473M01.TJ (MSMg01no473_m01.g1)
ACCAG555977AG555978
length795774
length of high quality
(start - end)
517 (39 - 555)570 (75 - 644)
definitionCHROMAT_FILE: MSMg01no473_m01.b1 PHD_FILE: MSMg01no473_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:58 2005CHROMAT_FILE: MSMg01no473_m01.g1 PHD_FILE: MSMg01no473_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CACAGCCTTACACCTGCCTGGCAATGGTATGGAATAAGCAAAGTCAACCT
CCATGTCTCCTGCCTCCCCAAGTGGCTGAGCCCAGTTTCAGAGCTAAAGT
AGGAGCACATTAACCCTACAAAGCCCAGAAAAGGCAGCCCAGCTAAAAGC
ACATATTCCATTTACAGGCCACAGCTTTTGGGAAAACCGCCAGCTCCAGA
TGTTTGGGGCCCAATTAAGAAAAAGCTGTACATCTGCTATAAATGTACTG
GTGATGGGGGGCTAGGTTCCACCTGTGTACGTTATTCAGTTTCTGCCTCA
GGTTGTGAGATTACTAAGGATTCAGGTTAGTTGATTCTTTGATCTTCCTG
TGAAGTTCTTATCCCCTTAAAGTCTTAAAACTTTCCTCCTATTCTTCCAT
AAAGGTCCCCATGCTCCATCCATTGTTAGGCTGTAAGATTCTGCATCTGT
GTGAGTCAGCTGCTGGGTGAAGCCTCTCAGAAGACAACATGCTCCTGGAT
GGAAATCAAAGAGTGTCATTATCAGTGGCAAAGATTGGTGCTGGTTTCAA
GTTAGGCAAGGTTTTGGGTGGGCATGCCCTCAGTATATTCTCCCTCCCCC
GTCCCTGCAATCCTTGATAAATAGGATAACTTTGAATAACAAAGCTCTTG
GGAACGTNGGGGTCCCTTGTCACTCAAAGGGATTACCTCGCTGTCCATAT
GAGACAAGGGTTCTCCACCCTCTTAATTTCCTAGAGTTCCGGTAT
GAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTACAGGTCCAAAACATGGCAGGGA
CCAGGAGCTGATGCAGAAGCCAAGGATAGTTTGTTTCACCTGATTTACTA
AATCAGAATCCAAGAACACCAGCCTAGGGAGTGAACTACTAACAATGGGC
TTGGTCATTTTCCATTACTTACTAATTAAGAAAATTAGTTATAGATAGGT
CATTGGAGATCATTTTCTCAAATTAGGTGTTCTATTTTCATATAACCCTG
GTTTTTATGAAGTAGCATTGGTTACCACTGGTAAACACATGTATTTTACT
TGAAGTTTAGTTACTAACCTAGCTTCCAGATAAGACATTACCAATCACAC
ATCAATTTTTGTCTTTCCTAAATAAATGGATGTTGTTTCCGTAGTTTATA
CAATGGTGACAAAAGTGTTAAAGTGGATAAGAATCTCAAAGAAGGTTATG
TCCTTGATTCTGATATTTGACTTCACGATTAAAATGTGTCACTGTAAATA
TTTAGATTGGTTATTTGATTCAGCTTTTCATTGAAGAGCCAAGTCACAAG
GACACTGTCTGTACCTGTCCTAAGGACTGCAACAGCTACAGTGGAAGGCA
TAGAAACTGGCAAACACAGTAATGACGGGTTAAGGGCGTGAACTTATACA
AGTGCCTCGGGATATAGTTAGCCATGCAAGCGAGCCTTAAGAACCAGAAT
GAGTGTTAACAACCTGGGTGGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_m01.g1 MSMg01no473_m01.g1 CHROMAT_FILE:
MSMg01no473_m01.g1 PHD_FILE: MSMg01no473_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:58 2005
         (570 letters)



>mm_chr17_39144880_39145849
          Length = 970

 Score = 1035 bits (535), Expect = 0.0
 Identities = 562/571 (98%), Gaps = 2/571 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacaggtccaaaacatggcagggaccaggagctgatgcagaagccaaggatagtttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacaggtccaaaacatggcagggaccaggagctgatgcagaagccaaggatagtttgt 260

                                                                       
Query: 61  ttcacctgatttactaaatcagaatccaagaacaccagcctagggag-tgaactactaac 119
           |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 261 ttcacctgatttactaaatcagaatccaagaataccagcctagg-aggtgaactactaac 319

                                                                       
Query: 120 aatgggcttggtcattttccattacttactaattaagaaaattagttatagataggtcat 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 aatgggcttggtcattttccattacttactaattaagaaaattagttatagacaggtcat 379

                                                                       
Query: 180 tggagatcattttctcaaattaggtgttctattttcatataaccctggtttttatgaagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggagatcattttctcaaattaggtgttctattttcatataaccctggtttttatgaagt 439

                                                                       
Query: 240 agcattggttaccactggtaaacacatgtattttacttgaagtttagttactaacctagc 299
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 agcattggtgaccactggtaaacacgtgtattttacttgaagtttagttactaacctagc 499

                                                                       
Query: 300 ttccagataagacattaccaatcacacatcaatttttgtctttcctaaataaatggatgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttccagataagacattaccaatcacacatcaatttttgtctttcctaaataaatggatgt 559

                                                                       
Query: 360 tgtttccgtagtttatacaatggtgacaaaagtgttaaagtggataagaatctcaaagaa 419
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtttctgtagtttatacaatggtgacaaaagtgttaaagtggataagaatctcaaagaa 619

                                                                       
Query: 420 ggttatgtccttgattctgatatttgacttcacgattaaaatgtgtcactgtaaatattt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggttatgtccttgattctgatatttgacttcacgattaaaatgtgtcactgtaaatattt 679

                                                                       
Query: 480 agattggttatttgattcagcttttcattgaagagccaagtcacaaggacactgtctgta 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agattggttatttgattcagcttttcattgaagagccaagtcacaaggacactgtctgta 739

                                          
Query: 540 cctgtcctaaggactgcaacagctacagtgg 570
           ||||||||||||| | |||||||||||||||
Sbjct: 740 cctgtcctaaggatttcaacagctacagtgg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)