BAC Information

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BAC

Clone NameMSMg01-474A16
Chromosome17 (Build37)
Map Location 57,200,786 - 57,201,178
singlet/doubletsinglet
Overlap genenone
Upstream geneChaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23
Downstream geneCrb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474A16.T7 (MSMg01no474_a16.b1)MSMg01-474A16.TJ (MSMg01no474_a16.g1)
ACCAG556197AG556198
length726740
length of high quality
(start - end)
473 (72 - 544)388 (75 - 462)
definitionCHROMAT_FILE: MSMg01no474_a16.b1 PHD_FILE: MSMg01no474_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:21 2005CHROMAT_FILE: MSMg01no474_a16.g1 PHD_FILE: MSMg01no474_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTAAATTTGCGGCGCTAAACGACTCCTATTTCAAGACCACCGCGGAA
TTCCTTATGTTACTGAATTATCAGCCTAGTTTACTTGACCAGTACCAGGA
AAATGAAATAGTTTACTACCAAAAAAAAAAAGAAAAGAAAGTTGCAAGGA
GTGATGCACATACCTTTAATCCCAGCATGTGAGAGGCAGAAGCAAGTGGA
TCTCTGTGAGTTTGCGGCAAGCCTGGTCTACATAGTTTATTCCAGGATAG
CCTGGTCTACATGGTGAAATCCTGCTTCAGGGGAAACACACACACACACA
CACACACACACACATACTCACACACACACACACAGAGAGCTCAGGAGATG
TTCAGTGTCTGTGAGGGCTGTGCATAAGGACCACATGAGCTCATCAAAAA
GGCTGGATGTGATGCTGCAGGCCTCGCATACCAGTGCTGAGGGCAGAGAC
ACAAGGGTCCCTAGGGCTTGCTGCCAACCAGCTTAGTTCAAGGTTGAGTG
AGAGACCCTGTGCTGATAGGATATGGACAGTATAGAGAGAGAGATGGGGT
AGGACATCTGACTCTTCTCTTCGGGCTTGGCTCGCGTGTGCGCGCGCACA
CACACACACAAAACCATGGGAGTGTATTCAAAGTCTGTTTCTTTTTTTAT
TATCTCTCTCTTTCTCCACAATTCTACCACCCACTAACCTTCCTCACTTC
CTTCTAACCATATCCCCCTCCCACTN
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCTTAGCATGCCTGAGACCCCTGG
GTTCCATTTTCATCCCATAACCAAAAAAATCAACCAACCTGTACAGGACT
AGTTTTGTAGAAAGATACATGTAGGCTTGTAGTCAGAGTGTAATCAGAAC
ACCTGCTTAGATTAAACCTGTGCGGTATTAAAAAAAAAAAAAAAAAAATT
CGGACAAAGACCTGTGCAGAATCTCGCCCAGCTTAACGGAAGGCCTTATG
TCCACACTGAAGAACTTTTTTATGAGGTCCACCTGCCAGGGAAGTGTCTG
TGAGGAAGCATGGATTTGGGGCGTCTGTGCAGAAGTAGTGATGTCCCACG
GCACCCACACAGAAACTCTTATGCATGGAAACATCTGGTAGCTGGTAGAG
GGAGTGGGTGGCACTTTCACCTGTTCACCACAGATGTATGTGTACAGCCT
GAGCGGGTACCGTATTGACCTCTTGGATGAATCTTTGGTTAATACGTGTT
TCCGCCATCTCATATTATGTTCCGTCCATTGCTTTTCTATCACATTGTCT
TTCTTAACCATGTTATCATTTTTTCCCTTTTTTTCTCAACTTTATCTTTT
TTTTTTTTTTTTTATCTATCCTCCTCTACTTTTTTTTTTATTTATTTTCT
CTATCTCTTATATTTTCCTTCTCACTTTTTTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_a16.g1 MSMg01no474_a16.g1 CHROMAT_FILE:
MSMg01no474_a16.g1 PHD_FILE: MSMg01no474_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:21 2005
         (388 letters)



>mm_chr17_57200410_57201197
          Length = 788

 Score =  663 bits (343), Expect = 0.0
 Identities = 378/393 (96%), Gaps = 6/393 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccttagcatgcctgagacccctgggttccattttcatcccataaccaaaaaaatcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctccttagcatgcctgagacccctgggttccattttcatcccataaccaaaaaaatcaac 710

                                                                       
Query: 61  caacctgtacaggactagttttgtagaaagatacatgtaggcttgtagtcagagtgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caacctgtacaggactagttttgtagaaagatacatgtaggcttgtagtcagagtgtaat 650

                                                                       
Query: 121 cagaacacctgcttagattaaacctgtgcggtatt------aaaaaaaaaaaaaaaaaaa 174
           |||||||||||||||||||||||| ||||||||||      |||||||||||||||||||
Sbjct: 649 cagaacacctgcttagattaaacccgtgcggtattaaaaaaaaaaaaaaaaaaaaaaaaa 590

                                                                       
Query: 175 ttcggacaaagacctgtgcagaatctcgcccagcttaacggaaggccttatgtccacact 234
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 accggacaaagatctgtgcagaatctcgcccagcttaacggaaggccttatgtccacact 530

                                                                       
Query: 235 gaagaacttttttatgaggtccacctgccagggaagtgtctgtgaggaagcatggatttg 294
           ||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaagaacatccgtatgaggtccacctgccagggaagtgtctgtgaggaagcatggatttg 470

                                                                       
Query: 295 gggcgtctgtgcagaagtagtgatgtcccacggcacccacacagaaactcttatgcatgg 354
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggcgtctgcgcagaagtagtgatgtcccacggcacccacacagaaactcttatgcatgg 410

                                            
Query: 355 aaacatctggtagctggtagagggagtgggtgg 387
           |||||||||||||||||||||||||||||||||
Sbjct: 409 aaacatctggtagctggtagagggagtgggtgg 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)