BAC Information

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BAC

Clone NameMSMg01-474A21
Chromosome17 (Build37)
Map Location 26,793,294 - 26,793,474
singlet/doubletsinglet
Overlap geneErgic1
Upstream geneTmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668
Downstream geneAtp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474A21.T7 (MSMg01no474_a21.b1)MSMg01-474A21.TJ (MSMg01no474_a21.g1)
ACCAG556207AG556208
length758985
length of high quality
(start - end)
190 (50 - 239)---
definitionCHROMAT_FILE: MSMg01no474_a21.b1 PHD_FILE: MSMg01no474_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:22 2005CHROMAT_FILE: MSMg01no474_a21.g1 PHD_FILE: MSMg01no474_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCATGCATAGACTTTTAGCTATGCTCTCAAGTCCAGAGAGAG
CCGCGGGCCTGGGCTTCATTTATATTGAGATGGTTTGCATACTTTTGTAA
TGAAGGGGTATCTGCAGTAGGAAGTTTTGGGGTTTTTTTTGTTTGTTTGT
TTGGTTTTGGTTTTGTTTTTCTTANNTANTCTCTTATGCCTACCTGCATT
CTCTGCCTTTTGTCCTTTTTCCTCTGATTCCTTTTATCTCTCCTTCCCTT
TTTATATCACTTCATTCTTATTTTTTTTTTAAACTGCCCCTGGCCACTTG
GCTAGATTTCTTATCTTCCCCCACCCATTCCGTCCCCCAGTTTATTATAC
CATTCCCTCTTGGTGAGTGAATCCCCCCACCTGCGTCACTCCCCCCATCC
TCTTATTGCCAGTCTAACTTTTGCCTCCCCCCTTGTCTTTCTCATCCTAT
TCTTTGCTTTCACTCCCAATGTCATTTCCTCCTCGCACCCATACTTCTCT
TGTCTAGCCTGTTCTCGCTTTTTCCCCTCTCTCCACCCCTCCCTCCCCTT
CTCTTCCTCTCCCCACCCCCCCATTCTCCCGCCCTCCATCCTCTATCCCT
CCGTATCCTCCCACCCCCCCACCCTTCTTTTTTTTCCTCCCCCGCCTCCC
CCCCCTTCATCTCCCACCATCTCTTTATTCACTACTCCTCCCCGCCCTCC
ACATCCCC
ACCCATCACTCCCANAAAAGANNGNNNNNNCCCCTTTCCTCACTCAGGGG
GGNNNNNNNGNNNGTTAACANCGACCGAGGGGGGGNGNNGGAGAAAGGGG
AAGAAAAAGAAAAGAAAAAGATATTTCCCCCACAAAACAAACAAACAGAA
CCAAACACCCCACAGCCGCCCTCCACGGAGGGGGGGGGGGCCCCGCCAGA
CCGCCACCGAAACCCCAGCAAACAACCACCAAACGACAAAACACAACCCA
CCCACACCGCCAGCAGCCGCCCTTCTTTTTTTACAAATACGTAACCCAAA
GCGCCGCTGACCCTTCATCAACATACCACAGGACAGGCCAACCACCAACA
GAGCTCTTCTTTCCTGCTTTTTACACCCCCCGCCACCACACCCCACACAC
GACTCCACACACTTACTCTTTCCCCCTCACCCCTACCACGCCCAACCAGC
AAACTTCACATGACACCCAACATACAATAAAACAATAATTCCATAACAAC
CCCCCCCCCATTTCTACAATAGCACGACATCTACCATACCAAAAACCGCC
CACACAACCACCTCCCCTACACCGCATCTCACACCACTCTCTATCCATCG
CGTCTATTGATCCACAAGATACACATCCTCCTACAACCTACACAACATAG
CCCAGACACTCCCCCACATTATCCCCATTCTCTCACCATCCTCGCCGCCC
CACTCCCCAGCACCCACATCCCACACCACTACCCCACATACACACCTACC
TTCCGGACCAACACATCCACCCAACACCTATCACACCCAACGCTACATCT
TCAACATCAACCAACCTCACAAACCAACTCGGCTAATAACTACTACCACT
ACCTAACATATCATTCCTTCCTCTCTCTCACCACACCACCGATACAACAA
ACGACACACACCTCTTACACTTATGCCTATCCGACTCGCCGTTTAACCAC
GCGCCAACATATAGATACCCTATTTAACACTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_a21.b1 MSMg01no474_a21.b1 CHROMAT_FILE:
MSMg01no474_a21.b1 PHD_FILE: MSMg01no474_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:22 2005
         (190 letters)



>mm_chr17_26793090_26793675
          Length = 586

 Score =  286 bits (148), Expect = 5e-82
 Identities = 174/185 (94%), Gaps = 4/185 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgcatagacttttagctatgctctcaagtccagagagagccgcgggcctggg 64
           |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgcagagaattttagctatgttctcaagtccagagagagccgcgggcctggg 264

                                                                       
Query: 65  cttcatttatattgagatggtttgcatacttttgtaatgaaggggtatctgcagtaggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 cttcatttatattgagatggtttgcatacttttgtaatgaaggggtacctgcagtaggaa 324

                                                                       
Query: 125 gttttggggttttttttgtttgtttgtttggttttggttttgtttttcttanntantctc 184
           |||||||||||||||  ||||  ||||||||||||||||||||||||||||  || ||||
Sbjct: 325 gttttggggtttttt--gttt--ttgtttggttttggttttgtttttcttaaatagtctc 380

                
Query: 185 ttatg 189
           |||||
Sbjct: 381 ttatg 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 586
Length adjustment: 8
Effective length of query: 182
Effective length of database: 578
Effective search space:   105196
Effective search space used:   105196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)