BAC Information

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BAC

Clone NameMSMg01-474L21
Chromosome17 (Build37)
Map Location 14,399,637 - 14,399,845
singlet/doubletsinglet
Overlap genenone
Upstream geneSmok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
Downstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474L21.T7 (MSMg01no474_l21.b1)MSMg01-474L21.TJ (MSMg01no474_l21.g1)
ACCAG556732AG556733
length750750
length of high quality
(start - end)
487 (77 - 563)236 (327 - 562)
definitionCHROMAT_FILE: MSMg01no474_l21.b1 PHD_FILE: MSMg01no474_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:18 2005CHROMAT_FILE: MSMg01no474_l21.g1 PHD_FILE: MSMg01no474_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCCGC
GGAATTCAGAACTCTTTCCCTGGACAACAGGGTACCCGTAAGTATAGCTT
TACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTA
TCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGGACT
TTCTCTAGTGTTAGGAGCCTTTTTGTTCCTTTTCACATGTTATCAAGTGG
TTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTATCAGAA
GTAAAGCGGGGAGAGAGAGTAGGATTTTATGAGGAAATATGGTTCACAAA
ATAAGTATATAGGCCTTTCCACGGGTCTTGAACCCGAGGAAAAGTTTAGG
TCAGGTAAGAATACCTGGGGAGAGATTGGAAGGAAGGAGAAGGAAAAAGA
AAAGAAAAAAGATCAATCAGCGGAGGGTTCTAGGAGAAGGAGCCTATACT
CATCACTAGATGAGCTCAAGGAGCCAGTTCTTAATAGTTCTGAATCAGAT
GAAAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTGAAACCAC
TGGACAACTAACAAAGATCGTCCCGAGAACGCAGGAAACCCTCTCAGATT
TTGTGTCCGAATGGCCGAGGCCCCACAACGATTTTTTGTGAATCACAAAC
AGCCCCACCTCCGTGAAAAAAATTTATTTTTGAAACCCCCCCCCCCAAAG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGAAATTCTCACTTGTTGATGAAAGGTAAGATTAC
ACACCTGGCACTGGCTGCTTGGCTGACTGCAGTGAAGCAGCGCTTTGCTC
TGGCCCTTTCTAAATGTGTTTGTTATGTTGGCTTACACAGAGGTGCTATT
CACGGCGGTGCTGAGCCTCCTTCTCGCTTGCTATGGACGGGTGCCGGAGC
CTGGTCTAAAGTAGATTTGAGTCTCCTGGGAACTCCACCCTGAATGTGGA
CACGTTGGCTAATATTTTATATTTTAGTAAACATCAGGTGCCTTTTGTTG
TCTAAAACCAAAGACACACAAGGGAATGAGAGAAGGAAAGAGTCCAGGCA
GGTGAGCCCCTCATGGGTGGGACCGGGTATCTCTGTGTGCAATTGGCATC
TAGGCAGGTCACCGATCTTGGTTTCTACCAATCACCATGAGCTGCCCTAT
GCCCCAGGTAAGGAGATGCTGGCTCTGAAGGTCTTGGGACTATCTGGAAA
TACCCATAAGCCCACCTGTGTCCCTGAAGAACTTACCTGCCTCTTGGTAA
CTTCCTGTGAACTGCCACCGAGGCTTTCCTCTGAACTCCAGCCCTCTATC
TCCAGTCCCACAGGAAACCTCCAACAAAATTTCCCCCTTAAAAAGGCTTT
TACCTTTTTCAAAAGTTCAATCTCCTCTCCACCCAAGGGATTCCCTGCCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_l21.g1 MSMg01no474_l21.g1 CHROMAT_FILE:
MSMg01no474_l21.g1 PHD_FILE: MSMg01no474_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:18 2005
         (236 letters)



>mm_chr17_14399437_14400072
          Length = 636

 Score =  348 bits (180), Expect = e-100
 Identities = 209/236 (88%), Gaps = 27/236 (11%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaacatcaggtgccttttgttgtctaaaaccaaagacacacaagggaatgagagaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaacatcaggtgccttttgttgtctaaaaccaaagacacacaagggaatgagagaagg 260

                                                                       
Query: 61  aaagagtccaggcaggtgagcccctcatgggtgggaccgggtatctctgtgtgcaattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagagtccaggcaggtgagcccctcatgggtgggaccgggtatctctgtgtgcaattgg 320

                                                                       
Query: 121 catctaggcaggtcaccgatcttggtttctaccaatcaccatgagctgccctatgcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 321 catctaggcaggtcaccgatcttggtttctaccaatcaccatgagctg------------ 368

                                                                   
Query: 181 ggtaaggagatgctggctctgaaggtcttgggactatctggaaatacccataagcc 236
                          |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ---------------gctctgaaggtcttgggactatctggaaatacccataagcc 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)