BAC Information

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BAC

Clone NameMSMg01-476D10
Chromosome17 (Build37)
Map Location 16,012,037 - 16,190,062
singlet/doubletdoublet
Overlap genenone
Upstream geneWdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476D10.T7 (MSMg01no476_d10.b1)MSMg01-476D10.TJ (MSMg01no476_d10.g1)
ACCAG557858AG557859
length751766
length of high quality
(start - end)
249 (65 - 313)235 (76 - 310)
definitionCHROMAT_FILE: MSMg01no476_d10.b1 PHD_FILE: MSMg01no476_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:15 2005CHROMAT_FILE: MSMg01no476_d10.g1 PHD_FILE: MSMg01no476_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,189,816 - 16,190,062)(16,012,037 - 16,012,267)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCGGAA
TTCACCTTTGCCTGTTAGGAAATATATTTAAAATGAGTGTGACAATTTTT
TCTTATATTTTGTGACAGTTTGTGTAAAAGTTAAAAATATAATATGGTCA
TGCCGTATAGCCTAGGATGCTAGTTGAGTTTCAGAGTTGAAAGTTCAAAG
GTGAATCCAGCCAGTCTTATAGGTCAGTAAAAAGTCTTGGGTTGTTTCTC
ATAAGATCCAAAACAACCCGAATCAGCAGGAAACTCTGAAGTTCGCTTAG
CAGGAAGCAGCTTTTTTTCCAAAACAATTTCCAGCCTTCAATGATACTTA
GATGATGCTCCAATAATTAAATGACACATTTAAATTTAATTACAAAATTT
AAACTTCAATGCCTATTGTTTGCAGATATTAAAAACTATAAAAGTTATGG
CAGACAAAAAAAAAAAAAACCTATCCAATACAAGAGTAATTTTCAAGTCC
ACTGTATAGGACAAACCAGTTGGTACAAGACAAAAATGCACAAAGGAGTC
AGTTTGCTTCCAGTGAAACATCAAGCCTCCTTGCTCTCCTTTTGGGTCTT
GTCTCTCTCAGATCATTGCACTGAAAACATACAAGGTTGAATGATCTTTT
AGCTTAACACATTAAGTGTGTTGCTCAGACCTGTTATCCCTAATTTTGGG
AGACTCATTACCGCATAGACCCCTTATTTCTGGCTCTCTTAGCCCTGAAA
C
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGTAGCGTCATGGACTGAGACGT
GTAAGTTAGAACTCTTTGTCCACAGTATTCAGTGTTGACAAATTATGCTG
TCAATTCAGCTTTTGGTGAAAGTAAGGGAAAACAAGTTTTAATAGGATTT
CATAGTTTGGTGGTGTGATTCCGTGGTAATACAGTATGCTTGGGTGCAAT
ATTATTAGTAATATAATACTTTCATGTTGGGTAGTAAGACAGGAATGAGA
TTTCTGCCTGTGATTATTTTTTGATAAATTCAAGGCCAGATTGTGAAATA
TAACATGATTTTTTACAGACCACCGTGTCAGATGAGATCTCTCGACAGAT
ATGAACGTAATTCTATTCTCCGACTCACAACTATGAACGCCGCCGCTTTT
CTTTTTTACCCATATATACCCCGTGAAGCCTTCAATCCCCTTTTACAGTA
CGCTAGATTATTCATTTGCTGAGCCAGCGGTATTGATATTCCATCCTCAA
TAACTTTTTCTTCTAAACGATATATCTTATTTCTAACTCTATGCCTAAGT
CCATCATCTCCCTTCTTTGTCCCTCTCCCCTTTTCTTCCCTAATTCTTTT
CTTCCCCCCCCTTCATTTTTTTACCCCCTATTTTTGCCCTCCTCTTTCTT
GTCTCTCTCCCCCCCCATTATCCACTTTCTCCCTCCTTTCCTCCCCCTTT
TTCTTCTCCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_d10.b1 MSMg01no476_d10.b1 CHROMAT_FILE:
MSMg01no476_d10.b1 PHD_FILE: MSMg01no476_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:15 2005
         (249 letters)



>mm_chr17_16189616_16190264
          Length = 649

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggaaatatatttaaaatgagtgtgacaattttttcttatattttgtgacagtttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 447 ttaggaaatatatttaaaatgagtgtgacaattttttcttatattttgtgacagtttatg 388

                                                                       
Query: 61  taaaagttaaaaatataatatggtcatgccgtatagcctaggatgctagttgagtttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taaaagttaaaaatataatatggtcatgccgtatagcctaggatgctagttgagtttcag 328

                                                                       
Query: 121 agttgaaagttcaaaggtgaatccagccagtcttataggtcagtaaaaagtcttgggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agttgaaagttcaaaggtgaatccagccagtcttataggtcagtaaaaagtcttgggttg 268

                                                                       
Query: 181 tttctcataagatccaaaacaacccgaatcagcaggaaactctgaagttcgcttagcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttctcataagatccaaaacaacccgaatcagcaggaaactctgaagttcgcttagcagg 208

                  
Query: 241 aagcagc 247
           |||||||
Sbjct: 207 aagcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_d10.g1 MSMg01no476_d10.g1 CHROMAT_FILE:
MSMg01no476_d10.g1 PHD_FILE: MSMg01no476_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:15 2005
         (235 letters)



>mm_chr17_16011837_16012471
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtagcgtcatggactgagacgtgtaagttagaactctttgtccacagtattcagtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggtagcgtcatggactgagacgtgtaagttagaactctttgtccacagtattcagtgt 260

                                                                       
Query: 61  tgacaaattatgctgtcaattcagcttttggtgaaagtaagggaaaacaagttttaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaaattatgctgtcaattcagcttttggtgaaagtaagggaaaacaagttttaatag 320

                                                                       
Query: 121 gatttcatagtttggtggtgtgattccgtggtaatacagtatgcttgggtgcaatattat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 gatttcatagtttggtggtgtgattccgtggtaatacagtatgcttgggtgcaaaattat 380

                                                              
Query: 181 tagtaatataatactttcatgttgggtagtaagacaggaatgagatttctg 231
           |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tagtaatataatactttcatgttgggtagtaagataggaatgagatttctg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)