Query= MSMg01no476_h20.b1 MSMg01no476_h20.b1 CHROMAT_FILE:
MSMg01no476_h20.b1 PHD_FILE: MSMg01no476_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:37 2005
(388 letters)
>mm_chr17_79952031_79952823
Length = 793
Score = 638 bits (330), Expect = 0.0
Identities = 373/392 (95%), Gaps = 11/392 (2%)
Strand = Plus / Plus
Query: 5 gaattcactaaggt----tcccatagctttttcctccgtaagggaaagtatacaacctcc 60
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactaaggtataat---atagctttttcctccgtaagggaaagtatacaacctcc 261
Query: 61 tacttttgggttatttagatagatat---aactgcttaatagataaaagactaagtattt 117
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 262 tacttttgggttatttagatagatataacaactgcttgatagataaaagactaagtattt 321
Query: 118 ggtctcaccttggaatgttgaataagttgttcaagggtctaagaacatcatgaaccaaga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggtctcaccttggaatgttgaataagttgttcaagggtctaagaacatcatgaaccaaga 381
Query: 178 gagtttgtgaaattgatgtatggatcttaaatcctataaaatactttaaaaataaagcat 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 gagtttgtgaaattgatgtatggatctcaaatcctataaaatactttaaaaataaagcat 441
Query: 238 tcaaa-tactatttaagtcccaaggaactctatcccaaatttattttatcctctcactgg 296
|||| ||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||
Sbjct: 442 ccaaaatactatttaagtccccaggaactctattccaaattaattgcatcctctcactgg 501
Query: 297 cctacacttcccagtaactactaaacactctgtgtttttaatagtttttattacagttgg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cctacacttcccagtaactactaaacactctgtgtttttaatagtttttattacagttgg 561
Query: 357 tttcattcttataatatgcatgcatacataca 388
||||||||||||||||||||||||||||||||
Sbjct: 562 tttcattcttataatatgcatgcatacataca 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 793
Length adjustment: 9
Effective length of query: 379
Effective length of database: 784
Effective search space: 297136
Effective search space used: 297136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_h20.g1 MSMg01no476_h20.g1 CHROMAT_FILE:
MSMg01no476_h20.g1 PHD_FILE: MSMg01no476_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:37 2005
(166 letters)
>mm_chr17_80144350_80144918
Length = 569
Score = 267 bits (138), Expect = 3e-76
Identities = 160/168 (95%), Gaps = 3/168 (1%)
Strand = Plus / Minus
Query: 1 ttctttggttcctaatttcccgtgaataattcctgcctgcttgccatccagcgctcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 368 ttctttggttcctaatttcccgtgaataattcctgcctgcttgccatccagggctcttct 309
Query: 61 gaa-attt--aaagttagaaatcttgtagtcagatgtgctggcctccgtttctggtgtta 117
||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 308 gaacatttaaaaagttagaaatcttgtagtcagatgcgctggcctccgtttctggtgtta 249
Query: 118 gagctgagagaacaaggaccttgcggctctctgacccctgcgtggagt 165
|||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct: 248 gagctgagagaacaaggaccttgcagctctctggcccctgcatggagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 569
Length adjustment: 8
Effective length of query: 158
Effective length of database: 561
Effective search space: 88638
Effective search space used: 88638
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
