Query= MSMg01no477_f05.b1 MSMg01no477_f05.b1 CHROMAT_FILE:
MSMg01no477_f05.b1 PHD_FILE: MSMg01no477_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:44 2005
(681 letters)
>mm_chr17_11117733_11118813
Length = 1081
Score = 1222 bits (632), Expect = 0.0
Identities = 668/680 (98%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgggctggccatccttctctccatttgcagaaaatgttttttgttgctgtaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctgggctggccatccttctctccatttgcagaaaatgttttttgttgctgtaat 261
Query: 64 ggtaatgctgcttggcaaagtgccaagagggaagagaggaattaaaatatggaacattga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggtaatgctgcttggcaaagtgccaagagggaagagaggaattaaaatatggaacattga 321
Query: 124 gtaaaggttcagggaatttatgtttttaaaagagttcaaagaacttgggctcagggatgg 183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 322 gtaaaggttcagggaatttatgtttttaaaagagttcaaagaacgtgggctcagggatgg 381
Query: 184 ctcagttggtaaagtgcttgctttgcaaacctgaggacctaaattcaatccccaagacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcagttggtaaagtgcttgctttgcaaacctgaggacctaaattcaatccccaagacac 441
Query: 244 acaaaaaaattctgcctgtggtggcacattcttataatcccagcacggggaaggcagaga 303
||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct: 442 acaaaaaaattctgcctgtggtggcacgttctcataatcccagcaaggggaaggcagaga 501
Query: 304 aacaggaagagaggtagggcttgttggccagtcagtcctgtggagcct-gc-cgttccaa 361
||||||| |||||||||||||||||||||||| ||||||||||||||| | | ||||||
Sbjct: 502 aacaggaggagaggtagggcttgttggccagtgagtcctgtggagccttgttcattccaa 561
Query: 362 gttcaccgaacaaccatgtctttaaatcaagaggtggaaaccaattgagaaaaccatata 421
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 gttcaccgaacaaccatgtctttaaatcaagaggtggagaccaattgagaaaaccatata 621
Query: 422 atattgacctttggccttcacatttatgtgtataaatgtggaaatggatgtgtaaataaa 481
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atattgacctctggccttcacatttatgtgtataaatgtggaaatggatgtgtaaataaa 681
Query: 482 tgaacacatataagtatggacaggggattgataagttgattttacttagactgttgtgca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgaacacatataagtatggacaggggattgataagttgattttacttagactgttgtgca 741
Query: 542 taaggtctggtccttagagtgtgtctgctggtcttgacaatgaagtcttgcctaggatca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaggtctggtccttagagtgtgtctgctggtcttgacaatgaagtcttgcctaggatca 801
Query: 602 atgtttttaggaaatttgcagtaagaatttcatttcttagtacaaagcaatgtgccagtg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atgtttttaggaaatttgcagtaagaatttcatttcttagtacaaagcaatgtgccagtg 861
Query: 662 cctgcatgtttatgtggcag 681
||||||||||||||||||||
Sbjct: 862 cctgcatgtttatgtggcag 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_f05.g1 MSMg01no477_f05.g1 CHROMAT_FILE:
MSMg01no477_f05.g1 PHD_FILE: MSMg01no477_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:44 2005
(653 letters)
>mm_chr17_11297967_11299018
Length = 1052
Score = 1247 bits (645), Expect = 0.0
Identities = 651/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 1 aggtacacagtaaaatgcttcgtggtgtttttatggatacttactagcatttgacagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 852 aggtacacagtaaaatgcttcgtggtgtttttatggatacttactagcagttgacagtaa 793
Query: 61 aagaaccagacatggtctgcccttaaggaactcaggactactccagggtgtgtactagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aagaaccagacatggtctgcccttaaggaactcaggactactccagggtgtgtactagag 733
Query: 121 gagaaggcagtgccaggcattatggatggaattctttcccctaattccctgcagtaaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gagaaggcagtgccaggcattatggatggaattctttcccctaattccctgcagtaaagg 673
Query: 181 cctagtctccagaacctctgaaggcagttgcccttggagaaaatgccttcatgaagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cctagtctccagaacctctgaaggcagttgcccttggagaaaatgccttcatgaagggaa 613
Query: 241 gtactcttaaaatgtggtagttaatgggcactggttgcatctgattaatctaataaagtg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gtac-cttaaaatgtggtagttaatgggcactggttgcatctgattaatctaataaagtg 554
Query: 301 agaacacagaatgttcagacaccagggaaatgcattcagggaaggaagagaagagcttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agaacacagaatgttcagacaccagggaaatgcattcagggaaggaagagaagagcttag 494
Query: 361 ccatctgcaagccgaagacaaaaggtcttaaggaaaagtctaacttgaccacaccctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccatctgcaagccgaagacaaaaggtcttaaggaaaagtctaacttgaccacaccctcat 434
Query: 421 gcagcatctagaactgaaagaaggcatcagtctgtaaacattctggaacatcatccagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcagcatctagaactgaaagaaggcatcagtctgtaaacattctggaacatcatccagaa 374
Query: 481 tgttccactaggaaaggaatgcaccaggaatataaatccaactacacagcaacagatgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgttccactaggaaaggaatgcaccaggaatataaatccaactacacagcaacagatgac 314
Query: 541 ttcaaagaaacagaggaaggacgggtaatcaaaaagtagtgagcccttcctgatgcccat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcaaagaaacagaggaaggacgggtaatcaaaaagtagtgagcccttcctgatgcccat 254
Query: 601 gctcacacatgattagaaaccaggattcacatgaatgccaactgctccttgat 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gctcacacatgattagaaaccaggattcacatgaatgccaactgctccttgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
