Query= MSMg01no479_f07.b1 MSMg01no479_f07.b1 CHROMAT_FILE:
MSMg01no479_f07.b1 PHD_FILE: MSMg01no479_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:17 2005
(605 letters)
>mm_chr17_90407324_90408326
Length = 1003
Score = 1083 bits (560), Expect = 0.0
Identities = 591/602 (98%), Gaps = 4/602 (0%)
Strand = Plus / Plus
Query: 5 gaattctcggcactccagaagtcagagaaacctgaggagaaaaagaggctttctccttgg 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagcactccagaagtcagagaaacctgaggagaaaaagaggctttctccttgg 264
Query: 65 tttgaaagtagctaatccctgaattttccttcgtaaatgaggatatgtgattaagaggaa 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaaagtagctaatgcctgaattttccttcgtaaatgaggatatgtgattaagaggaa 324
Query: 125 aggcagcatgacttcagaagaagaaaagggcatcagcttcagggactcagacaagcatag 184
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 aggcagcatgacttcagaagaagaaaagggcatcagcttcagggactcagataagcatag 384
Query: 185 cccagagctggctaacttctccgacctgagctctgcagtcccgttcagcctgtgatcatt 244
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 cccagagctggctaacttctccgacctgagttctgcagtcccgttcagcctgtgatcatt 444
Query: 245 tcctttagggagtcaaaaaggacccaggaggaatcatgggtaaaagaacataaccctctg 304
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctttagggagtcaaaaaggtcccaggaggaatcatgggtaaaagaacataaccctctg 504
Query: 305 atttctaaaatgaaagtaacatgaacaaggggcagggtctgctgggatc-tccatctatc 363
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 505 atttctaaaatgaaagtaacatgaacaaggggcagggtctgctgggatcctc-atctatc 563
Query: 364 agctgttaagaaaatagtttggcagagaatgtgttcttggtgtttcctgtattttgttat 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agttgttaagaaaatagtttggcagagaatgtgttcttggtgtttcctgtattttgttat 623
Query: 424 ccacactattttatcacagttctgcacataccatttggatgtaatactgcatcaggaatg 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccacagtattttatcacagttctgcacataccatttggatgtaatactgcatcaggaatg 683
Query: 484 gaagagaaggaaactttgtccagttggtcattcatttatttaagggtagactgaggtgag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaagagaaggaaactttgtccagttggtcattcatttatttaagggtagactgaggtgag 743
Query: 544 gcactgaactaagaaagacaaaggagaaagtgggtacttgaaagagggggagagatagaa 603
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 744 gcactgaactaagaaagacaaaggagaaagtgggtacttgaaagaggg--agagatagaa 801
Query: 604 ga 605
||
Sbjct: 802 ga 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1003
Length adjustment: 10
Effective length of query: 595
Effective length of database: 993
Effective search space: 590835
Effective search space used: 590835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_f07.g1 MSMg01no479_f07.g1 CHROMAT_FILE:
MSMg01no479_f07.g1 PHD_FILE: MSMg01no479_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:17 2005
(644 letters)
>mm_chr17_90445809_90446852
Length = 1044
Score = 1203 bits (622), Expect = 0.0
Identities = 640/648 (98%), Gaps = 4/648 (0%)
Strand = Plus / Minus
Query: 1 gccagaccctacatgtatgcatacctacttacacacacacacaaacacacactcactcac 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gccagaccctccatgtatgcatacctacttacacacacacacaaacacacactcactcac 923
Query: 61 acagattcacacacatacacacatagactcatatacatcacaaac----agattcacaca 116
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 922 acagattcacacacatacacacatagactcacatacatcacaaacacatagattcacaca 863
Query: 117 tagacacatacacacacattcattgtcagattccctcagaagaatatggaaatctacaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tagacacatacacacacattcattgtcagattccctcagaagaatatggaaatctacaat 803
Query: 177 attagtgccagtgctttgcccacttgcttaactcaaagctttgaaatgaaaaatatttca 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 attagtgccagtgctttgcccacttgcttaactcaaagctttgaaatgaaaaatatttca 743
Query: 237 catttccttaatggtaatattcaccatacttcattcccagacattgaccaacttacaaca 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 catttccttaatggtaatattcaccatacttcattcccagacattgaccaacttacaaca 683
Query: 297 atctcttcccataatctgatagaaaacatccatccttttcagcaggtgtgctcagtctcc 356
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atttcttcccataatctgatagaaaacatccatccttttcagcaggtgtgctcagtctcc 623
Query: 357 tgtagaaggtggaaagtagatggaatactaagaattagagtaacagaaaaccatctccaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtagaaggtggaaagtagatggaatactaagaattagagtaacagaaaaccatctccaa 563
Query: 417 agaacatacaaactagtctgaactggtgtgaagtctaactgaaatgcaacatttcattaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agaacatacaaactagtctgaactggtgtgaagtctaactgaaatgcaacatttcattaa 503
Query: 477 aatttcagcacactccagactctgcagtatattgaataatacatgcttaagactgttcat 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatttcagcacactccagactctgcagtatattgaataatacatgcttaagactgttcat 443
Query: 537 ttaactttgaatttcataaacactcctggactctgttctgtaagatttggaagtcattgg 596
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 ttaactttgaatttcataaacactcctggactctgtcctgtaagatttggaagtcattgg 383
Query: 597 cagcaccactgacctcctcatcccattacctgtgtgtattctcgctcg 644
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagcaccactgacctcctcatcccattacctgtgtgtattctcgctcg 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
