BAC Information

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BAC

Clone NameMSMg01-479J06
Chromosome17 (Build37)
Map Location 74,194,897 - 74,195,497
singlet/doubletsinglet
Overlap genenone
Upstream geneYpel5, Lbh, Lycat, LOC668709, Capn13, LOC100043666, Galnt14, Ehd3
Downstream geneLOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479J06.T7 (MSMg01no479_j06.b1)MSMg01-479J06.TJ (MSMg01no479_j06.g1)
ACCAG560424AG560425
length761758
length of high quality
(start - end)
601 (73 - 673)385 (329 - 713)
definitionCHROMAT_FILE: MSMg01no479_j06.b1 PHD_FILE: MSMg01no479_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:38 2005CHROMAT_FILE: MSMg01no479_j06.g1 PHD_FILE: MSMg01no479_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCATATCTTTCAAAAATATAAATCTCAGACCTGTCACATAGGATT
TCACATACAAAAGTGATATGAAATGTTTCAGTCTCAAGTGGAACATCTTT
GCTTCTGTATTTAGCACTTCCTACCGCAGAGCAAGACAAAAACAAGCTTC
TATGTTTCTCATGGAGCCAGTGAGCATGTTATCAACAGAAATGTACATTC
CAAGATAATGCAGACCCTGCTTTCCAGGGTCTGCTGTGTTCCTCTCTCTT
CTGTGCCAATGGGTTGAGGAATGACTGGCGCCATCTTGGACCATAAATCA
TTTCCAAACAGTTCCTGGAGGGTGCAAACCCTCAGGGCAGTACCTTCCAT
GCAGCTGAAGAATTTCCGGCCAGAAAGGATAAGAATTTCCTGTTTTGCTT
TTCATTATTACTTTAAATAATGATATTCTGAGTCCTAAAGGAAAATCATA
AGCAGCAAAGCCAAGAGGGCATGTCAGCACCTTTCCTATGTTAATTCAGA
GTGAGAGCAGTAGCTTTAGAAATGATCAAAATGCACAAAATGTCCCAGTT
GGGACACAGGCCTTGCTGGAAGGGATGATCTGGCACCCAGTACAGCTGTC
CTGCAAGCTCTGAGCACATGGTTTGTGGCGATTGCCATTTTGCCCAATGG
TAACAGATGCTGTGGCAGCCACTCACGTTGGAACTTAGTAGATTGATTCA
TCAACTCATTT
NNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCCGCGAAATTCTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACTCTGAGATTCCACCTCAAACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAAATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCATATTATTGGACATAGTACTACCAGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTA
AGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGACTGGATACAGAA
AATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATG
AATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAAAACCTAGGATACCCAAGACATAAGATACAATT
TGCTAAACACATTANACTCAAGAAGAATGAAGACTGAAGTGTGGACACTA
TGCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_j06.b1 MSMg01no479_j06.b1 CHROMAT_FILE:
MSMg01no479_j06.b1 PHD_FILE: MSMg01no479_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:38 2005
         (601 letters)



>mm_chr17_74194697_74195697
          Length = 1001

 Score = 1040 bits (538), Expect = 0.0
 Identities = 586/602 (97%), Gaps = 2/602 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatctcagacctgtcacataggatttcacatacaaaagtgatatgaaatgtttcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatctcagacctgtcacataggatttcacatacaaaagtgatatgaaatgtttcagt 260

                                                                       
Query: 61  ctcaagtggaacatctttgcttctgtatttagcacttcctaccgcagagcaagacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ctcaagtggaacatctttgcttctgtatttagcacttcctaccccagagcaagacaaaaa 320

                                                                       
Query: 121 caagcttctatgtttctcatggagccagt-gagcatgttatcaacagaaatgtacattcc 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 caagcttctatgtttctcatggagccagttgagcatgttatcaacagaaatgtacattcc 380

                                                                       
Query: 180 aagataatgcagaccctgctttccagggtctgctgtgttcctctctcttctgtgccaatg 239
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 aagataatgcagatcctgctttccagggtcttctgtgttcctctctcttctgtgccaatg 440

                                                                       
Query: 240 ggttgaggaatgactggcgccatcttggaccataaatcatttccaaacagttcctggagg 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttgaggaaggactggcgccatcttggaccataaatcatttccaaacagttcctggagg 500

                                                                       
Query: 300 gtgcaaaccctcagggcagtaccttccatgcagctgaagaatttccggccagaaaggata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcaaaccctcagggcagtaccttccatgcagctgaagaatttccggccagaaaggata 560

                                                                       
Query: 360 agaatttcctgttttgcttttcattattactttaaataatgatattctgagtcctaaagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatttcctgttttgcttttcattattactttaaataatgatattctgagtcctaaagg 620

                                                                       
Query: 420 aaaatcataagcagcaaagccaagagggcatgtcagcacctttcctatgttaattcagag 479
           ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||
Sbjct: 621 aaaatcataagcagcaaggccaagagggcatgtcagcatctttcctacgttaatttagag 680

                                                                       
Query: 480 tgagagcagtagctttagaaatgatcaaaatgcacaaaatgtcccagttgggacacaggc 539
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 tgggagcagtagctttagaaatgatcaaaatgcacaaaatgtcccagttgggacactggc 740

                                                                       
Query: 540 cttgctggaagggatgatctggcacccagtacagctgtcctgcaagctctgagcacatgg 599
           ||||||||| || ||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 741 cttgctgga-ggaatggtctggtacccagtacagctgtcctgcaagctctgagaacatgg 799

             
Query: 600 tt 601
           ||
Sbjct: 800 tt 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)