Query= MSMg01no480_f09.b1 MSMg01no480_f09.b1 CHROMAT_FILE:
MSMg01no480_f09.b1 PHD_FILE: MSMg01no480_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:36 2005
(317 letters)
>mm_chr17_61374004_61374720
Length = 717
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 1 cggtacctcttcacagcaataaaacccccactaagacaagaatattacacgattaagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cggtacctcttcacagcaataaaacccccactaagacaagaatattacacgattaagctt 384
Query: 61 tcaatgtatttcattatattgatgttcttcattctttatgcaatattggatttatttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcaatgtatttcattatattgatgttcttcattctttatgcaatattggatttatttttc 324
Query: 121 tttgtgataatatcacaactcaaaagaagacattagaactcaaaaagaaagagttaaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttgtgataatatcacaactcaaaagaagacattagaactcaaaaagaaagagttaaatt 264
Query: 181 agaactcaatattagacattagaaaatgtctaatattggaatttttgttagatggtgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaactcaatattagacattagaaaatgtctaatattggaatttttgttagatggtgttt 204
Query: 241 ggattctgagagaccactgtcaacacaaattaaaaaatgattatttaagctgtctatgta 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 203 ggattctgagagaccactgtcaacacaaatt-aaaaatgattatttaagctgtctatgta 145
Query: 301 tatttacaagcagattt 317
|||||||||||||||||
Sbjct: 144 tatttacaagcagattt 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_f09.g1 MSMg01no480_f09.g1 CHROMAT_FILE:
MSMg01no480_f09.g1 PHD_FILE: MSMg01no480_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:36 2005
(532 letters)
>mm_chr17_61198839_61199770
Length = 932
Score = 946 bits (489), Expect = 0.0
Identities = 522/533 (97%), Gaps = 2/533 (0%)
Strand = Plus / Plus
Query: 1 ttcccaatatcttctcatgcgccttgcactcctgctgaacctcctgtccatcttagcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccaatatcttctcatgcgccttgcactcctgctgaacctcctgtccatcttagcaag 260
Query: 61 tggctctaccatgcatgtgcatacttaatcaaaaagagaaaacctacttgcaaagttgaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctctaccatgcatgtgcatatttaatcaaaaagagaaaacctacttgcaaagttgaa 320
Query: 121 atttccaaagatattttaacaatactaagaaaatgagagaacaataaagatgaatataaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttccaaagatattttaacaatactaagaaaatgagagaacaataaagatgaatataaa 380
Query: 181 tatgagagagcactgtgacacctcagactcttgatttgctgagatcatttcttttttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tatgagagagcactgtgacacctcagactcttgatttgctgagatcatttc-tttttttt 439
Query: 241 tca-ttttttccaatttttattagatattttcttcatttacaattcaaatgctattccag 299
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 440 tcatttttttcccatttttattagatattttcttcatttacaattcaaatgttatcccag 499
Query: 300 caaaacagaaggaaccaaatttcacatgaatgagaagctgctatgtattttaacgagcaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 caaaacagaaggaaccaaatttcacatgaatgagaagctgctatgtattttaacgagcaa 559
Query: 360 atggcctttcccaaaccaactataaattttatctttgtgaacactacgttttcatttttg 419
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 atggcctttcccaaaccaactataaattttatctttgtgaacactacgttctcatttttt 619
Query: 420 acttttacatagtatataaaaatattttaatgtattaaaagacagtaggaattcttataa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acttttacatagtatataaaaatattttaatgtattaaaagacagtaggaattcttataa 679
Query: 480 aacactgatacatttctctttcaagatttcatgcaaaacattcaagaaaatac 532
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacactgacacatttccctttcaagatttcatgcaaaacattcaagaaaatac 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
