BAC Information

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BAC

Clone NameMSMg01-480K07
Chromosome17 (Build37)
Map Location 25,130,777 - 25,131,267
singlet/doubletsinglet
Overlap geneCramp1l
Upstream genePrss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l
Downstream geneIft140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480K07.T7 (MSMg01no480_k07.b1)MSMg01-480K07.TJ (MSMg01no480_k07.g1)
ACCAG561236AG561237
length753725
length of high quality
(start - end)		61 (250 - 310)491 (76 - 566)
definitionCHROMAT_FILE: MSMg01no480_k07.b1 PHD_FILE: MSMg01no480_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:00 2005CHROMAT_FILE: MSMg01no480_k07.g1 PHD_FILE: MSMg01no480_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAAATTTGGGGCGCTAAAGGAGGACGAGTTTCGAAGCCGCACGGAANN
ANNNGGGCTTACCCCACCCGAGGGCACAAGCNACAGNCNANNGGGGAAAN
CGGAAAAGCANAGTACACCCAAAAAGAAAGAAANAAAAGAAACAGGGAAG
GAACCCTTGAGCTAACACACCGAGNCNCCNANCCGGAAAAGAGAGGNGAA
ACNCAGAACGGGGGGGGCNCGCCNNNGANCCCACCACNCAGGAGGTTGAC
GCAGCCTCTGCCTCTGAGTTCAAGGCCAGCCAGGGATACAGCCAGAATTC
CAGGATGGTTTTTTTTTTATAAAGAAACCGGGNCNGGAAAAANNAGAAAG
GGGGAAGGAAAGAAAAAAAACGAGAAAGCAGAGGGGCAGGGAGGGNCCCC
ACNNANNCGGCNCACGAGNNCAAAGGCCCACANCACCNCAGAAGAGNNAA
CAGCCCGGCAGCACAGAGAACCCACGGCACGAAAGGNAACAAANCACACC
CCCAAGCAGAAGCAAACCCAAGGGAGCCGGGAACAGACCCCAGAGGGAGG
ACAGGACAAAAGACCCCCGAGGGCAAGCACCACACCGGGGAAAAAGACCG
AAACCAACCAAACAAAAGAAACCCACCCCCCAACAACAAAGGAGGGCAGG
GCCGTTGTTTGAAAACAGGGCCCTCCCCTTAGGGAGGTCCCAAGCAGGAA
CCCCCCAACCTTAGGGAATCCCTCCGGGGCGCACAGGTATACCCAAAAGG
GGG

ACCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGATATCACAACTAGTAGATGTCTG
TGCTGGGCCCACTAGCTGAGATGAGGACAAATAGCCTTGAGGTGTAGTTA
GGCTATGGCCTATGGAGGTCCAGCAAGAACTGATGCTCCATCATATAGTG
GCTCAGATAGGCAGTCATGGCAGCAAAAAGCAATGCAACCACTTTATATA
CAGAAGAGTTTGCACAAAGAGCAGTAGGACTGGACAAGGACTTGTCCATT
ACATGGGGATGTTCTAATTTCTCTGAATGTAGGCAGGAAGTAGCAGGGTA
CTGCACCCTTTGATAGCTTTAAAATGACTCAGTGCAATCCTAACAGGCAG
TGTGCACTCCAGGTCACAGGGTTGAGGTCTTAGGGTGTGCTATGAAGATC
TACAGTCAAATGGAAGTGAGAAAACAGTGCACCTGTGTGTGAAAGACATA
AACAAACACTAGTAAATGGGAGGTCAGGTGAAGACAGGGTCATTAGATCT
TTTTCAACTTTTTTGTTGTCAAAAAAAATTGCAAGATAAAAGTTAGATCC
CTGAGCCAGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAAGCA
TGTAGATTTCTGAGTTTCAAAACAGCCTTGTCTACAGAATGATTTCCAAG
ACTAGCCGGGCCTACACAGAGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_k07.g1 MSMg01no480_k07.g1 CHROMAT_FILE:
MSMg01no480_k07.g1 PHD_FILE: MSMg01no480_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:01 2005
         (491 letters)



>mm_chr17_25130577_25131467
          Length = 891

 Score =  926 bits (479), Expect = 0.0
 Identities = 488/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatatcacaactagtagatgtctgtgctgggcccactagctgagatgaggacaaatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatatcacaactagtagatgtctgtgctgggcccactagctgagatgaggacaaatagc 260

                                                                       
Query: 61  cttgaggtgtagttaggctatggcctatggaggtccagcaagaactgatgctccatcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgaggtgtagttaggctatggcctatggaggtccagcaagaactgatgctccatcata 320

                                                                       
Query: 121 tagtggctcagataggcagtcatggcagcaaaaagcaatgcaaccactttatatacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtggctcagataggcagtcatggcagcaaaaagcaatgcaaccactttatatacagaa 380

                                                                       
Query: 181 gagtttgcacaaagagcagtaggactggacaaggacttgtccattacatggggatgttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtttgcacaaagagcagtaggactggacaaggacttgtccattacatggggatgttct 440

                                                                       
Query: 241 aatttctctgaatgtaggcaggaagtagcagggtactgcaccctttgatagctttaaaat 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaactctgaatgtaggcaggaagtagcagggtactgcaccctttgatagctttaaaat 500

                                                                       
Query: 301 gactcagtgcaatcctaacaggcagtgtgcactccaggtcacagggttgaggtcttaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactcagtgcaatcctaacaggcagtgtgcactccaggtcacagggttgaggtcttaggg 560

                                                                       
Query: 361 tgtgctatgaagatctacagtcaaatggaagtgagaaaacagtgcacctgtgtgtgaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgctatgaagatctacagtcaaatggaagtgagaaaacagtgcacctgtgtgtgaaag 620

                                                                       
Query: 421 acataaacaaacactagtaaatgggaggtcaggtgaagacagggtcattagatctttttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acataaacaaacactagtaaatgggaggtcaggtgaagacagggtcattagatctttttc 680

                      
Query: 481 aacttttttgt 491
           |||||||||||
Sbjct: 681 aacttttttgt 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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