BAC Information

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BAC

Clone NameMSMg01-480L06
Chromosome17 (Build37)
Map Location 79,265,941 - 79,371,453
singlet/doubletdoublet
Overlap geneEif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054
Downstream geneLOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821, Arl6ip2, LOC625074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480L06.T7 (MSMg01no480_l06.b1)MSMg01-480L06.TJ (MSMg01no480_l06.g1)
ACCAG561281AG561282
length766711
length of high quality
(start - end)
110 (94 - 203)224 (74 - 297)
definitionCHROMAT_FILE: MSMg01no480_l06.b1 PHD_FILE: MSMg01no480_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:05 2005CHROMAT_FILE: MSMg01no480_l06.g1 PHD_FILE: MSMg01no480_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,265,941 - 79,266,050)(79,371,230 - 79,371,453)
sequence
GGGAAAAGAGGGNAGGGCCAGGTTNNNNNGGGTAGGTTTGAATCTATAAX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGGATTCAGTA
TAACAGTTCACCCCCTCTGGCTGTACATGATGAAGCATCCTCTCTAGCAG
CTACAAAGAAGAAATGAACCCCACCTCAACAAGTATTAAAACGAATCACT
CAGTTGTACGCCACAAGGGACCACAGAAAAGCACAAGCCCCAGGGTGCCT
ATAGCGACCTGTTTCTTTCCCTCATTTCCCCCTCTCCATTCCTTAGGGCT
GGTAATTCTTTCAACCTGAAGGAATCCCATTTGGGGAAGGTTCGCCATTT
CGGGATCCCTTATTCCGGTTCACCATTTGGGCCCCTAAAAGGGGGGTTTG
GTGAAATGAAACCCCATTCCCCCTAACCCCATATTTTTGTTGGAAAAAAT
TTTATGTGAAAAAGGGGCCCCCCCCCCCCCAAAAAACTTTTAAAAAAATT
TTTTTTTTTTTTTTTTTGTAAAAAACCCCGAAAAACCCTTTTTGTGGCCC
CCAAAAAGGGGGGGTATTAAGGGGGGCCCCCCTCTTTTTTTCTCCCCTTT
TTCCCCCCCCACACCCCTTTTTTTTTTTGGTGGAGCGCCCCCGGAGATTT
TTTTTCTCCTAAAAAAAAGAGGCCCCCCCGGGGTATTTTTTTTTTTTTTT
TTTTAAAAAAAAGAGGTTGGTTTTTTTTTTATTGGGGGGTTTTTTTTTGT
TTATACCACGGCGGGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGGAATACATTGAAGCAGCCTGTTTCTTCACACGT
ACAGGTAACCAGGTGGTCCAGCAGTGAAGAGTGCATCCCTGAGATGCGGG
CACACACACACCTGCACGTTCTCTCCAGCTCTTTAGAACCTGATTGCATT
TGTTACACTGTTTAATTTCCTTAATACCTATAAGTAATTTCCCTTAGCAG
TATTATTTTCTCCAATATGATCGACTGATTTTGAAATTTGAGCCATGGTG
AAGTTTGAGTAAAACATGGTTTTGTCTTTATGAATTTAATTTTTTCCGCC
CTAGGGGCAAAAAAATTTCCTCTACCCGGCAAAACTCAAATGGACCCTTG
GCAGGGGTCCCCAAAAACATTCCTGGGGTGGGAAAAAAAAACTTTTTCCG
GGGGTTCCAATCCACAAAAAAATCCCCCCAATATTCCCCCCCCCCCAAAA
ACCCCCTTTTGTTGGGGGGGGGCCACATTTTCTTTCCTCCTTTTGGGAGG
GGGGTTTTTTTTGTAAAAAAAACCCCCCCCTTTTTTTTTTTTTCGCGGGG
TCCCATATTAAAAGGGTTGTTATTAAAAAAAAAAAACCTCCCCCCCCCCT
TTTNTTGCCTGGGGGGGTGGGGACNAAAAAAAAAAATATAATTTTTTTTT
TTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_l06.b1 MSMg01no480_l06.b1 CHROMAT_FILE:
MSMg01no480_l06.b1 PHD_FILE: MSMg01no480_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:05 2005
         (110 letters)



>mm_chr17_79265741_79266250
          Length = 510

 Score =  205 bits (106), Expect = 6e-58
 Identities = 109/110 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtataacagttcaccccctctggctgtacatgatgaagcatcctctctagcagcta 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagtataacagatcaccccctctggctgtacatgatgaagcatcctctctagcagcta 260

                                                             
Query: 61  caaagaagaaatgaaccccacctcaacaagtattaaaacgaatcactcag 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagaagaaatgaaccccacctcaacaagtattaaaacgaatcactcag 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 510
Length adjustment: 8
Effective length of query: 102
Effective length of database: 502
Effective search space:    51204
Effective search space used:    51204
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no480_l06.g1 MSMg01no480_l06.g1 CHROMAT_FILE:
MSMg01no480_l06.g1 PHD_FILE: MSMg01no480_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:05 2005
         (224 letters)



>mm_chr17_79371030_79371653
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaagcagcctgtttcttcacacgtacaggtaaccaggtggtccagcagtgaagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 attgaagcagcctgtttcttcacacgtacaggtaaccaggtggtccagcagtgaagagtg 365

                                                                       
Query: 61  catccctgagatgcgggcacacacacacctgcacgttctctccagctctttagaacctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catccctgagatgcgggcacacacacacctgcacgttctctccagctctttagaacctga 305

                                                                       
Query: 121 ttgcatttgttacactgtttaatttccttaatacctataagtaatttcccttagcagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttgcatttgttacactgtttaatttccttaatacctataagtaatttcccttagcagtat 245

                                                       
Query: 181 tattttctccaatatgatcgactgattttgaaatttgagccatg 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tattttctccaatatgatcgactgattttgaaatttgagccatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)