BAC Information

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BAC

Clone NameMSMg01-482D02
Chromosome17 (Build37)
Map Location 37,271,633 - 37,272,304
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973
Downstream geneOlfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482D02.T7 (MSMg01no482_d02.b1)MSMg01-482D02.TJ (MSMg01no482_d02.g1)
ACCAG562419AG562420
length699720
length of high quality
(start - end)		686 (12 - 697)603 (77 - 679)
definitionCHROMAT_FILE: MSMg01no482_d02.b1 PHD_FILE: MSMg01no482_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:03 2005CHROMAT_FILE: MSMg01no482_d02.g1 PHD_FILE: MSMg01no482_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTCGGAGAGGATCCGCGGAATTCCTGGGTTTGTACTCAGCA
TTTCCCCCAAGGACTCACTCAGGAAGGGCATAATTAATTTGGGTGGTACA
TATCCATCAGAGTCATGAAAGGTCAGATGACTATGAGAGCTAAGAGGAAG
AACATCAATTTGCATTTTGTGTCCCAATTGAACCTCGGGACATCTCTGGC
TGTCCTGGAATTCACTTTGTAGAGCAGGCTGGCTCAAAGACCAACCTGCC
TTAGCTTTCTAAGTATTGGGAATAAAATTGTGGGCCATTACCACCTGTCC
CAGAAGAATCATTTATCTTTGTGTACTCTGAAAATATTGGTATACTGAAT
AATACATCTTCTCTATTTGTTGCCCCTGTTGACAAGAGTTTGGGTCATGT
GTGTGGTAAGTTAACTAAAAAACTTACTGTTTAATTCATAGTGGGGAATA
TAGTTTAAGGAAGTATTTTATGGAGATGCATTTTTAAAGGGCATATCACA
TTCCCCAAGTCTTCCTTCAACCTCTCTCATGTGTTCTAGACCACAGACTT
TCCTCCTGTGAGGTTTGATTCACTTAATTTCCAAACATTAAGAATAACCC
TTACAGGTGCTTGGCATCAAACACTTTTACTTAGCAGTAGAGGAGAGATT
CTACAAATCTTTTCTTGTATCTTTGACTATAAAGCCAAAACTAAATGGT

CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTGAGGAATACTGAATGGCT
GAGAAGCACATAATAAATTTGCAACATCCATAATCATCAGGAAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAACTCAGGTGACAGTACATGCTGGCAAGAATGTGGAGAAAGAGGAA
CACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAAACACTCTGGAAA
TCAGTTTGGCGGTTCCTCAGAAAATTGGACATAGTACTATCGGAAGATCC
AGCAATACCTCTCCTGGGCATCTATCCAGAAGATATTCCAACTTGTAGTG
AAGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCATTTGTCCCTCAACAGAAAAATGGATACAGAAAAT
GTGGTACATTTACGCAATAAATTTATGAAATTCTAAGGCAAATGGATGCA
TCTGGAGGATATCATCCTGAGTGAGGCAACCCAATCACAAAAGAAAAGAC
ATGATATGCACTCACTAATAAGTGGATATTAGCCCAGAAGCTCAGAATAC
CCAAGATACAATTTGCAAAACACATGAAACTCAAGAAGAAAGAAGACCAA
ACTGTGAATACTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_d02.b1 MSMg01no482_d02.b1 CHROMAT_FILE:
MSMg01no482_d02.b1 PHD_FILE: MSMg01no482_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:03 2005
         (686 letters)



>mm_chr17_37271419_37272504
          Length = 1086

 Score = 1261 bits (652), Expect = 0.0
 Identities = 667/672 (99%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattcctgggtttgtactcagcatttcccccaaggactcactcaggaagggcataatt 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcctgggtttgtactcagcatttcccccaaggactcactcaggaagggcataatt 274

                                                                       
Query: 75  aatttgggtggtacatatccatcagagtcatgaaaggtcagatgactatgagagctaaga 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatttgggtggtacatatccatcagagtcatgaaaggtcagatgactatgagagctaaga 334

                                                                       
Query: 135 ggaagaacatcaatttgcattttgtgtcccaattgaacctcgggacatctctggctgtcc 194
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 ggaagaacatcaatttgcattttgtgtcccaattgaacctcaggacatctctggctgtcc 394

                                                                       
Query: 195 tggaattcactttgtagagcaggctggctcaaagaccaacctgccttagctttctaagta 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tggaattcactttgtagagcaggctggctcaaagaccaacctgccttagctttctaagta 454

                                                                       
Query: 255 ttgggaataaaattgtgggccattaccacctgtcccagaagaatcatttatctttgtgta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 455 ttgggaataaaattgtgggccattaccacctgtcccagaagaatcatttatttttgtgta 514

                                                                       
Query: 315 ctctgaaaatattggtatactgaataatacatcttctctatttgttgcccctgttgacaa 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctctgaaaatattggtatactgaataatacatcttctctatttgttgcccctgttgacaa 574

                                                                       
Query: 375 gagtttgggtcatgtgtgtggtaagttaactaaaaaacttactgtttaattcatagtggg 434
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagtttggatcatgtgtgtggtaagttaactaaaaaacttactgtttaattcatagtggg 634

                                                                       
Query: 435 gaatatagtttaaggaagtattttatggagatgcatttttaaagggcatatcacattccc 494
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 635 gaatatagtttaaggaagtattttatggagatgtatttttaaagggcatatcacattccc 694

                                                                       
Query: 495 caagtcttccttcaacctctctcatgtgttctagaccacagactttcctcctgtgaggtt 554
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 695 caagtcttccttcaacctctctcatgtgttctagaccacagactttcctcctgtgaagtt 754

                                                                       
Query: 555 tgattcacttaatttccaaacattaagaataacccttacaggtgcttggcatcaaacact 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgattcacttaatttccaaacattaagaataacccttacaggtgcttggcatcaaacact 814

                                                                       
Query: 615 tttacttagcagtagaggagagattctacaaatcttttcttgtatctttgactataaagc 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tttacttagcagtagaggagagattctacaaatcttttcttgtatctttgactataaagc 874

                       
Query: 675 caaaactaaatg 686
           ||||||||||||
Sbjct: 875 caaaactaaatg 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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