Query= MSMg01no482_l18.b1 MSMg01no482_l18.b1 CHROMAT_FILE:
MSMg01no482_l18.b1 PHD_FILE: MSMg01no482_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:42 2005
(493 letters)
>mm_chr17_9271216_9272108
Length = 893
Score = 893 bits (462), Expect = 0.0
Identities = 485/498 (97%), Gaps = 10/498 (2%)
Strand = Plus / Minus
Query: 1 tgctgggaattcttaaaacttggaaatgtaattcaagcttgtgttcatgaaaataacact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tgctgggaattcttaaaacttggaaatgtaattcaagcttgtgttcatgaaaataacact 634
Query: 61 ccattcactaactctaactggcttctctaggaggagtgggggtctgttgctttcttggtt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ccattcactagctctaactggcttctctaggaggagtgggggtctgttgctttcttggtt 574
Query: 121 atatactgtgtctactcttggcagcaatagtatgtctgttccttactcaagtgttctatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 atatactgtgtctactcttggcagcaatagtatgtctgttccttactcaagtgttctatc 514
Query: 181 actttgtgctcacagctgcagacttggtttccccatatttgtgagggaaatcacagcaag 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 513 actttgtgctcacagctgcagacttggtttctccatatttgtgagggaaatcacagcaag 454
Query: 241 ca-----ttttttctctcataggcgaagcactggctgatatcttagcagttagcagacag 295
|| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagcaac-----tctctcataggtgaagcactggctgatatcttagcagttagcagacag 399
Query: 296 gctgtgggactcgggtgtctgctctgtgccagcattgtctgccaagccagcatctctcct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gctgtgggactcgggtgtctgctctgtgccagcattgtctgccaagccagcatctctcct 339
Query: 356 ctgttggcaccagccctctgcacctcatagtgataagataagcaactcacacaggtagac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctgttggcaccagccctctgcacctcatagtgataagataagcaactcacacaggtagac 279
Query: 416 tgttttctgattgacacacagatgtgagagttttaaggaacatttataggtggtgtgggg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgttttctgattgacacacagatgtgagagttttaaggaacatttataggtggtgtgggg 219
Query: 476 gggagtgagagagaggaa 493
||||||||||||||||||
Sbjct: 218 gggagtgagagagaggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_l18.g1 MSMg01no482_l18.g1 CHROMAT_FILE:
MSMg01no482_l18.g1 PHD_FILE: MSMg01no482_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:42 2005
(647 letters)
>mm_chr17_9100132_9101174
Length = 1043
Score = 1168 bits (604), Expect = 0.0
Identities = 635/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Plus
Query: 1 ttaggaagggcagagaggaaagggcagcgtgtacctagttgcctctggcgaaatcagctc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggaagggcagagaggaaagggcagtgtgtacctagttgcctctggcgaaatcagctc 260
Query: 61 ttgtcctgggaatggagggttgccaagaagataaagcgtagtctccagaaggccttatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcctgggaatggagggttgccaagaagataaagcgtagtctccagaaggccttatga 320
Query: 121 agtgtgatctgtgtaggaggggtagttatgagagaacttcaaagcagacacagcttttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtgatctgtgtaggaggggtagttatgagagaacttcaaagcagacacagcttttgt 380
Query: 181 gagacatcacagggggaggctggagagatgggcaggcactgaggctgaaccttctaatgt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacatcacagggggaggctggagagatgggcaggcactgaggctgaaccttctaatgt 440
Query: 241 gaggttttttgttttgctaatgcgaggggtttttttgttcgtttgtttttgagtgaactg 300
|||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gaggggttttgttttgctaattcgaggggtttttt-gttcgtttgtttttgagtgaactg 499
Query: 301 tcatgacatgtcctatcttctgtagtaggaaggagccagccaagtttcagtgttctggct 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 tcatgacatgtcctatcttctgtagtaggaaggagccagtcaagtttcagtgttctggct 559
Query: 361 acatctattgcctccccagatcaccccacacagcctgtttcataggtgcagtggctatgg 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ac--ctattgcctccccagatcaccccacacagcctgtttcataggtgcagtggctatgg 617
Query: 421 gaactgaggagttgtcccgggttcaaagcaatggctcgacttagaaatcaaagcaagacc 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaactgag-agttgtcccgggttcaaagcaatggctcgacttagaaatcaaagcaagacc 676
Query: 481 ttccatggatttgtattactgccccaaaatgtaaaggcctgatatttggccacaggttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 677 ttccatggatttgtattactgccccaaaatgtaaaggcctgatatttggccacagattgt 736
Query: 541 cataaagacagtatggtctcattgttttcaagtacagtcaatggatattccttttggctt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cataaagacagtatggtctcattgttttcaagtacagtcaatggatattccttttggctt 796
Query: 601 cagcacgttttaaaacccaagtataaaacactaaaattatttggtg 646
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cagcacgttttaaaacccaagtataaaacactaaaattatttggtg 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1043
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1033
Effective search space: 658021
Effective search space used: 658021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
