BAC Information

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BAC

Clone NameMSMg01-484G16
Chromosome17 (Build37)
Map Location 23,737,863 - 23,738,447
singlet/doubletsinglet
Overlap geneZscan10
Upstream geneEG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13
Downstream geneLOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484G16.T7 (MSMg01no484_g16.b1)MSMg01-484G16.TJ (MSMg01no484_g16.g1)
ACCAG564109AG564110
length7851,187
length of high quality
(start - end)
583 (46 - 628)---
definitionCHROMAT_FILE: MSMg01no484_g16.b1 PHD_FILE: MSMg01no484_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:58 2005CHROMAT_FILE: MSMg01no484_g16.g1 PHD_FILE: MSMg01no484_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCAATTCCGCCTTAGAAAGCCTGTCCCTCCCCCAGGTCTCCAG
GACAAAAGGCCTATTAATATGCACCTCTGTAGGGGGTTGGCTGGGTGTGG
GGCGAGAAAGCTCTTTAGTGAAATCTGGCCGGTCTAAATTTGTATGTAGG
TACTGCTATAAAATCCACCTACACACTAGGGAGCTAGAGTGGTCCTCTGC
AAGAAATAACCCCCTTTCTCTGCTAGCAGTCTAACTTGCTCAACTCTGTT
AACTTGTTTTTTTTTGTTTTTTTTGTTTTTAAGGCCGAGATCCCCTTCTG
GTGCTAGGAACGCATGGCATCGTCACTTCTGGGACCCTCCCTCATGTCTC
CAAGGCCACAAATGCATCATGCTGTGTGGCCTTGGAGTCTCCAGCACGAG
TTACCCGCTCATTATAACCAAGACTTTTCTAGCTCTCAGCCTACCAGTAG
GTCCCCCGAAACACCCTTCACTCTCCACAGTGCTGTAAGCCTACACCCCA
GCCCTCCAACTCACCACTCCAGGTACCGACGCCTGAGGCCGAGATGTTTG
GGGATCCTTGGGAGGATTCAGGGTAAGAGGCAGCGTAAGCTAGTTTGGGA
AAGGAATCCCGGGAAATGGAACAGGAAGTTCCCTGCCTGACCCATCCCTT
TCAGGTAAGGGGATTAAGGGGCTTCCAGNAATTAACCCTTCACCTCCAAT
CTGGGTGGGGTAAGGAGAGGGAGGAGCCCGAACCN
TCCTCATATAATTAGATAGACTAAAAGGAGTGCCCGTGGGGTTCTCCCTC
TGTGTTGGTGGTGCTTGCCGGGCGGGTCGGTCTCCCGTGGGAATCCGCAC
GCCGTTAACAGACAGGGCGAACGAGAAGTTTCATTTTGTGTGGACTTAAT
GTATATGTATCGTTTTGGCATTCGTCCTGCTACGGCGGTGGTGTTGTGGA
GTATGCCCGGATTGATTTTTGAAATCTCCGATAATGTATTTTATATCCCT
GGATATCGAACTGGCTTGGAGGTTAAACTCGCGCATCCGCTTTTACCGCC
CGCCTATCGGTCTCGCATTCAAAATGGGCGAGTTGTACCCGTACCATCAT
GATTACACTCGCACCGATAGAATAACGCACCGACCACCTATAATACATTG
TGAAGAAGCCCATGATTTCGCCGTGAGCTACAATTAGCGATTTTCGAGCG
CCGTTTGCCCATACCCCATAATATGTCTAAAATAACGCCGATTAGTGTGT
TAGTTCGTAAATAATGCACGACCATATGTCGTTTTGAGGGGATGAGATGG
GACTTAATCGTTAGCGCGGCTGCGGACGTGTTGTTGGAGGAATAACCATG
TACTGGTAGATTATACCATGCATGCAAATATCATCAGCGGGACATTATTA
TTACGTATACTTTATGCGACACCTTAACTGACGATCGATTTGTTACTGGA
TACAGGTAAATACGTTGACAGTTAATAATAATTATATGTATGAGAGAATA
GTGAAGGTACATATGTGCGCGTATAATCATGGAGACCTAGTACGATTTAT
GTACACATACAGATATGCGATTACAAGTACGTCTTGGTCTTACATATTAT
TTATACTCTTCACCCGCTACTCTATTTAGACGTNCTCTAATTATTGCTCC
GCACACCTACCTTAATATTATCAACGCGTTTCTATATCGCGTTTCGTGTG
CAAGATGCACGATTGAGTAGATACGTCTATATTAGCTATAGACGCAACTT
TTAATACCAACTAAATCGTCCGCACTATTTATATTGTAATATCCTCTCGA
AACCTGTGATAAATCAAATACCACACGTATACCTCTCGGTCCGTTACGTC
TCTTTTCTTCACATCAGAGATTAGCACACTCTGTCTTACGTAGTTTCTGA
GCGCACTGTCTATGTACGTCTACTATATCGTATTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_g16.b1 MSMg01no484_g16.b1 CHROMAT_FILE:
MSMg01no484_g16.b1 PHD_FILE: MSMg01no484_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:58 2005
         (583 letters)



>mm_chr17_23737660_23738647
          Length = 988

 Score = 1054 bits (545), Expect = 0.0
 Identities = 573/585 (97%), Gaps = 5/585 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaggcaattccgccttagaaagcctgtccctcccccaggtctccaggacaaaag 63
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ggaattcaggcaagtaggccttagaaagcctgtccctcccccaggtctccaggacaaaag 729

                                                                       
Query: 64  gcctattaatatgcacctctgtagggggttggctgggtgtggggcgagaaagctctttag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gcctattaatatgcacctctgtagggggttggctgggtgtggggcgagaaagctctttag 669

                                                                       
Query: 124 tgaaatctggccggtctaaatttgtatgtaggtactgctataaaatccacctacacacta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgaaatctggccggtctaaatttgtatgtaggtactgctataaaatccacctacacacta 609

                                                                       
Query: 184 gggagctagagtggtcctctgcaagaaataaccccctttctctgctagcagtctaacttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gggagctagagtggtcctctgcaagaaataaccccctttctctgctagcagtctaacttg 549

                                                                       
Query: 244 ctcaactctgttaacttg-----tttttttttgttttttttgtttttaaggccgagatcc 298
           ||||||||||||||||||     ||||||||| |||||||| |||||||||| |||||||
Sbjct: 548 ctcaactctgttaacttgtttttttttttttttttttttttttttttaaggcagagatcc 489

                                                                       
Query: 299 ccttctggtgctaggaacgcatggcatcgtcacttctgggaccctccctcatgtctccaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccttctggtgctaggaacgcatggcatcgtcacttctgggaccctccctcatgtctccaa 429

                                                                       
Query: 359 ggccacaaatgcatcatgctgtgtggccttggagtctccagcacgagttacccgctcatt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggccacaaatgcatcatgctgtgtggccttggagtctccagcacgagttacccgctcatt 369

                                                                       
Query: 419 ataaccaagacttttctagctctcagcctaccagtaggtcccccgaaacacccttcactc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ataaccaagacttttctagctctcagcctaccagtaggtcccccgaaacacccttcactc 309

                                                                       
Query: 479 tccacagtgctgtaagcctacaccccagccctccaactcaccactccaggtaccgacgcc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tccacagtgctgtaagcctacaccccagccctccaactcaccactccaggtaccgacgcc 249

                                                        
Query: 539 tgaggccgagatgtttggggatccttgggaggattcagggtaaga 583
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 248 tgaggccgagatgtttggggatccttgggagaattcagggtaaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 988
Length adjustment: 10
Effective length of query: 573
Effective length of database: 978
Effective search space:   560394
Effective search space used:   560394
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)